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The map label for this gene is lsrR [H]

Identifier: 118478302

GI number: 118478302

Start: 2828653

End: 2829606

Strand: Direct

Name: lsrR [H]

Synonym: BALH_2665

Alternate gene names: 118478302

Gene position: 2828653-2829606 (Clockwise)

Preceding gene: 118478297

Following gene: 118478303

Centisome position: 53.81

GC content: 38.57

Gene sequence:

>954_bases
TTGTTGAAAGGGATGAAGAGTATGACTCAGCTGAACTTTGAAGAGAATTTATTAACGAAAGTAGCTTGGTACTATTATAA
GGACCAATTAACACAACAGGAGATCGCTTCACTTCTTCATATTTCAAGAAATAAAGTCGTCCGGTTATTAGATAAGGCGC
GGAGTGAAGGTATCGTTACATTTCACGTAAAAGGGACTGGTTTGCACTGTTTAAGTATTGAGCGTGACCTAATGAAAAAA
TTCCACTTAAAAGATGCTTTTATTATCCCGACCCCATTAAACAATTATCACGATTCTCTCGGAAAAGCTGCTGCACAATA
TTTAGAAACTCAGCTCCAGCAAGGCGATTTACTCGGTATTGGCTGGGGAGAAACAATTAGCAAAATGCTAGAAAACATTC
ATTTCGAAAGTTCTATTAATCTCTCAATCGTAACGTTAACAGGCGGAGTAAATCACTATCTCCCGAGAAAACAAAACTAT
TTACATTACATGCAAGGTGATCTTCACATTATCCCTACGCCGTTTCTAGCGTCTACAACCGAAATGGCACAAAGTATTCT
ATCAGAACCGAGCGTAAAAGATATGCTTCATGTCGCTTCACTTGCTCATACGGCTGTTGTCGGTATTGGAGGACTATCTC
AAGATGCTACGATTGTAAAAAAAGAAAAATTAACTTTACGTGAGATGACATATATTCGTAGTCAAAACGGTGCTGGCGAT
ATTTTAGGACAGTTTTATGATACAAATGGCGATTTATTAGAGCTCTCGCATCACAATCGTCTAATTGGCACGCCCCTCTC
TGTTTTGCGCAATATGAAGCATGTCGTCGGTGTTGCTGGAGGTACTGAAAAGATAGATGCAATTTATGGTGCCTTAAAAG
GAAAGTTTATTCATACATTAATTACCGATGAGGAAACTGCCCTTTCCTTATTACGAAAGGATGGTGATTGTTAA

Upstream 100 bases:

>100_bases
ATTCCTTTTTTTATATCTAGAACACTTTTTTCTACGTACTATTAATCGCTTCAACTGGAATAAACAAAATATATGGTACA
TATGTTTAAGCTGTGGTCAA

Downstream 100 bases:

>100_bases
TGTCCAATTTATTAGCTTTCGATGCTGGTACAGGAAGTATTCGAGCAGTTCTTTTTGATTTACATGGTAATCAAATTGCA
GTAAGTCAAAAAGAATGGAT

Product: deoxyribonucleoside regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLKGMKSMTQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTGLHCLSIERDLMKK
FHLKDAFIIPTPLNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETISKMLENIHFESSINLSIVTLTGGVNHYLPRKQNY
LHYMQGDLHIIPTPFLASTTEMAQSILSEPSVKDMLHVASLAHTAVVGIGGLSQDATIVKKEKLTLREMTYIRSQNGAGD
ILGQFYDTNGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKIDAIYGALKGKFIHTLITDEETALSLLRKDGDC

Sequences:

>Translated_317_residues
MLKGMKSMTQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTGLHCLSIERDLMKK
FHLKDAFIIPTPLNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETISKMLENIHFESSINLSIVTLTGGVNHYLPRKQNY
LHYMQGDLHIIPTPFLASTTEMAQSILSEPSVKDMLHVASLAHTAVVGIGGLSQDATIVKKEKLTLREMTYIRSQNGAGD
ILGQFYDTNGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKIDAIYGALKGKFIHTLITDEETALSLLRKDGDC
>Mature_317_residues
MLKGMKSMTQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVTFHVKGTGLHCLSIERDLMKK
FHLKDAFIIPTPLNNYHDSLGKAAAQYLETQLQQGDLLGIGWGETISKMLENIHFESSINLSIVTLTGGVNHYLPRKQNY
LHYMQGDLHIIPTPFLASTTEMAQSILSEPSVKDMLHVASLAHTAVVGIGGLSQDATIVKKEKLTLREMTYIRSQNGAGD
ILGQFYDTNGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKIDAIYGALKGKFIHTLITDEETALSLLRKDGDC

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsr operon and its own transcription. In the presence of AI-2, lsrR is inactivated by binding phospho-AI-2, leading to the transcriptio

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=304, Percent_Identity=38.8157894736842, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI87082414, Length=314, Percent_Identity=25.796178343949, Blast_Score=126, Evalue=2e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 35311; Mature: 35311

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKGMKSMTQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVT
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
FHVKGTGLHCLSIERDLMKKFHLKDAFIIPTPLNNYHDSLGKAAAQYLETQLQQGDLLGI
EEEECCCEEEEHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
GWGETISKMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGDLHIIPTPFLASTT
CCHHHHHHHHHHCCCCCCCCEEEEEEECCCHHCCCCCCCHHHHCCCCEEEECCCHHHHHH
EMAQSILSEPSVKDMLHVASLAHTAVVGIGGLSQDATIVKKEKLTLREMTYIRSQNGAGD
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
ILGQFYDTNGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKIDAIYGALKGKFIHTL
HHHHEECCCCCEEEECCCCCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE
ITDEETALSLLRKDGDC
ECCCHHHHHHHHCCCCC
>Mature Secondary Structure
MLKGMKSMTQLNFEENLLTKVAWYYYKDQLTQQEIASLLHISRNKVVRLLDKARSEGIVT
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
FHVKGTGLHCLSIERDLMKKFHLKDAFIIPTPLNNYHDSLGKAAAQYLETQLQQGDLLGI
EEEECCCEEEEHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
GWGETISKMLENIHFESSINLSIVTLTGGVNHYLPRKQNYLHYMQGDLHIIPTPFLASTT
CCHHHHHHHHHHCCCCCCCCEEEEEEECCCHHCCCCCCCHHHHCCCCEEEECCCHHHHHH
EMAQSILSEPSVKDMLHVASLAHTAVVGIGGLSQDATIVKKEKLTLREMTYIRSQNGAGD
HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
ILGQFYDTNGDLLELSHHNRLIGTPLSVLRNMKHVVGVAGGTEKIDAIYGALKGKFIHTL
HHHHEECCCCCEEEECCCCCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE
ITDEETALSLLRKDGDC
ECCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA