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The map label for this gene is ycjC [C]

Identifier: 118477277

GI number: 118477277

Start: 1734822

End: 1735271

Strand: Direct

Name: ycjC [C]

Synonym: BALH_1588

Alternate gene names: 118477277

Gene position: 1734822-1735271 (Clockwise)

Preceding gene: 118477276

Following gene: 118477279

Centisome position: 33.0

GC content: 29.78

Gene sequence:

>450_bases
ATGAGCTTAGGAGAACAGTTAAAAAAACTACGAGAGTCAAAGGGATTTTCACAAGAGGATGTTGCTAAAAAGATTGGTGT
GACGAGGCAAGCGGTATATAAGTGGGAGAATGATAAAAGTTGCCCTGATATTGATAATTTAATTTTATTAAGCGAAATGT
ACAATGTTACGCTCGATGAGTTAATAAAAGGGAATCAAAACATTAAAGAAAAAATACATATTAATGAAGAAGATGAGGAT
TTTGAGAAAGAGAACGAGTTTGGTTTTTATATTGGATTTGGTTTGTTAATAATGAGTGCTTTCATTGATTATGAAGGAAT
TCAAAAGATGTTATTAGGAATTGCGTTATTCATGATGGTTTTTTATTTTGATATGAAAAAAGTTATTTTGAATGAATATC
GATCTTTTTTTCGAGGAAGAGAGCCAAAAGATATATGTGATAAAAAATGA

Upstream 100 bases:

>100_bases
TTTTTTACTGTGTAAACGAATGGTTTACATTGAGTTTTACTAATGGTTTCTTTCTTTTTCATCTCCCATTATGTCATAAT
TTGTTAAAGGAGGGGACGTT

Downstream 100 bases:

>100_bases
GAAGAGTCATTTATATTTCCTAGGAAAGAGTATGGTGAATAATGTTATTTCTTTATAATGATTTTGGGATATTGTTAATA
TTTTAAAAAGCTGTTTGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; HTH-Type Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Cro/CI Family; Xin-Antitoxin System Antitoxin Component Xre Family; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Family Protein

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDELIKGNQNIKEKIHINEEDED
FEKENEFGFYIGFGLLIMSAFIDYEGIQKMLLGIALFMMVFYFDMKKVILNEYRSFFRGREPKDICDKK

Sequences:

>Translated_149_residues
MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDELIKGNQNIKEKIHINEEDED
FEKENEFGFYIGFGLLIMSAFIDYEGIQKMLLGIALFMMVFYFDMKKVILNEYRSFFRGREPKDICDKK
>Mature_148_residues
SLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDELIKGNQNIKEKIHINEEDEDF
EKENEFGFYIGFGLLIMSAFIDYEGIQKMLLGIALFMMVFYFDMKKVILNEYRSFFRGREPKDICDKK

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17534; Mature: 17402

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE
CCHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
LIKGNQNIKEKIHINEEDEDFEKENEFGFYIGFGLLIMSAFIDYEGIQKMLLGIALFMMV
HHCCCCCHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYFDMKKVILNEYRSFFRGREPKDICDKK
HHHHHHHHHHHHHHHHHCCCCCHHCCCCC
>Mature Secondary Structure 
SLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE
CHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
LIKGNQNIKEKIHINEEDEDFEKENEFGFYIGFGLLIMSAFIDYEGIQKMLLGIALFMMV
HHCCCCCHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYFDMKKVILNEYRSFFRGREPKDICDKK
HHHHHHHHHHHHHHHHHCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA