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The map label for this gene is dsdA [H]

Identifier: 118477257

GI number: 118477257

Start: 1708955

End: 1710361

Strand: Direct

Name: dsdA [H]

Synonym: BALH_1568

Alternate gene names: 118477257

Gene position: 1708955-1710361 (Clockwise)

Preceding gene: 118477256

Following gene: 118477258

Centisome position: 32.51

GC content: 36.6

Gene sequence:

>1407_bases
TTGGCATTTGACTTGGTTCGCCAACAATTTATAGATTTTTATAAGAATTTTAAACCAGGAAGAGGAATGAAGGAAATAGA
GAAATTAAAAGAGGAATATCCACTATTAAATAAATTGATTGAAACAGAAGAAGTGCTTTGGGTGAATCCGAACATGGAAA
AGTATGAAACGGCAATAAAAGATTCGCCACTCAGTGAAGAGAATGTAAAAGATGCGAAGGAGAGGTTAAAGCGTTTTGCA
TCATACATTGCGAAAGTTTTTCCTGAAACGAAAGAGACGAAAGGCATAATTGAATCACCTTTATTGAAAATCCCTTCTAT
GAAACAAGCTTTAGAGAAAAATTACGAGCAACCTATTTTAGGAGAATTATTATTAAAATGTGATAGTCATCTCCCGATAT
CAGGATCAATTAAAGCTAGAGGCGGCATTTATGAAGTGTTGAAACATGCTGAACAATTAGCTTTGCAGCACGGTATGTTA
ACAGAAGAAGATGATTATTCCATTTTAGATAGTGATACATGTAGAGAGTTTTTTGCCAAATATTCAATTGCGGTCGGTTC
AACAGGTAATTTAGGGCTAAGCATTGGGATTATGAGTGCGAAACTAGGTTTTAACGTAACTGTTCATATGTCAGCAGATG
CGAAACAATGGAAAAAAGATTTATTAAGAAGTAAAGGTGTAAATGTTATTGAATATGAAGCTGATTATAGTAAAGCTGTA
GAAGAAGGAAGAAGGCAAGCAGATGCTGATCCTAGCTGTTATTTTGTAGATGATGAAAACTCACATGATTTATTTTTAGG
ATACGCAGTAGCGGCATCGCGTTTACAAAAACAATTAGAAGAGTTAGAGATTATAGTGGATGAAGAGCATCCTTTATTCG
TTTATCTGCCATGCGGAGTAGGTGGCGGACCTGGCGGAGTCGCATTTGGTTTAAAGTTATTGTATAAAGACAACGTACAC
TGTTTCTTTGCAGAGCCAACACATTCTCCATGTATGTTAATCGGGTTAATGACAGGACTTCATGATAAAATCGCCGTTCA
GGATATCGGAATTGATAATGTAACAGACGCAGACGGACTTGCGGTAGGAAGGCCGTCTGGATTTGTTGGTAAAACGATGG
AACCATTTTTGAGTGGGGATTACACAGTAAGTGATGAAGAATTGTATAGGTTGTTAAAAGAGCTAGCTGATACGGAAAAT
ATTTATTTAGAGCCTTCTGCATTAGCTGGTATGATAGGACCAGTAAGAGTATGTAAAGAAGATGCGTATTTACAAAAGCA
ACAGTTAATGGAGAAGGTGCAAAAAGGTACTCATATTGTATGGGGAACGGGCGGTAGTATGGTTCCAGAAGATGTGATGA
ATGGGTATTATAAAACAGGTGAGGCATTAACAATATTAGAAAAATGA

Upstream 100 bases:

>100_bases
ACCGTTCCTAACAGGAACCTGCCGTCATTCTTTCACAATAGGTGGATGAAAAGGTCACAAATCTTACGGACAGGAAAAAG
GTGAGATTCCTTTTCGGTAG

Downstream 100 bases:

>100_bases
GGCTAGTTGTAGCCTCATTTTTTCATGTACATAAAAATCTTTGTTATTTTCACAATAGTTCTTTATAGTATAGATAAAGG
ATAACTAATATTGAATAAAT

Product: D-serine dehydratase

Products: NA

Alternate protein names: D-serine deaminase; DSD [H]

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MAFDLVRQQFIDFYKNFKPGRGMKEIEKLKEEYPLLNKLIETEEVLWVNPNMEKYETAIKDSPLSEENVKDAKERLKRFA
SYIAKVFPETKETKGIIESPLLKIPSMKQALEKNYEQPILGELLLKCDSHLPISGSIKARGGIYEVLKHAEQLALQHGML
TEEDDYSILDSDTCREFFAKYSIAVGSTGNLGLSIGIMSAKLGFNVTVHMSADAKQWKKDLLRSKGVNVIEYEADYSKAV
EEGRRQADADPSCYFVDDENSHDLFLGYAVAASRLQKQLEELEIIVDEEHPLFVYLPCGVGGGPGGVAFGLKLLYKDNVH
CFFAEPTHSPCMLIGLMTGLHDKIAVQDIGIDNVTDADGLAVGRPSGFVGKTMEPFLSGDYTVSDEELYRLLKELADTEN
IYLEPSALAGMIGPVRVCKEDAYLQKQQLMEKVQKGTHIVWGTGGSMVPEDVMNGYYKTGEALTILEK

Sequences:

>Translated_468_residues
MAFDLVRQQFIDFYKNFKPGRGMKEIEKLKEEYPLLNKLIETEEVLWVNPNMEKYETAIKDSPLSEENVKDAKERLKRFA
SYIAKVFPETKETKGIIESPLLKIPSMKQALEKNYEQPILGELLLKCDSHLPISGSIKARGGIYEVLKHAEQLALQHGML
TEEDDYSILDSDTCREFFAKYSIAVGSTGNLGLSIGIMSAKLGFNVTVHMSADAKQWKKDLLRSKGVNVIEYEADYSKAV
EEGRRQADADPSCYFVDDENSHDLFLGYAVAASRLQKQLEELEIIVDEEHPLFVYLPCGVGGGPGGVAFGLKLLYKDNVH
CFFAEPTHSPCMLIGLMTGLHDKIAVQDIGIDNVTDADGLAVGRPSGFVGKTMEPFLSGDYTVSDEELYRLLKELADTEN
IYLEPSALAGMIGPVRVCKEDAYLQKQQLMEKVQKGTHIVWGTGGSMVPEDVMNGYYKTGEALTILEK
>Mature_467_residues
AFDLVRQQFIDFYKNFKPGRGMKEIEKLKEEYPLLNKLIETEEVLWVNPNMEKYETAIKDSPLSEENVKDAKERLKRFAS
YIAKVFPETKETKGIIESPLLKIPSMKQALEKNYEQPILGELLLKCDSHLPISGSIKARGGIYEVLKHAEQLALQHGMLT
EEDDYSILDSDTCREFFAKYSIAVGSTGNLGLSIGIMSAKLGFNVTVHMSADAKQWKKDLLRSKGVNVIEYEADYSKAVE
EGRRQADADPSCYFVDDENSHDLFLGYAVAASRLQKQLEELEIIVDEEHPLFVYLPCGVGGGPGGVAFGLKLLYKDNVHC
FFAEPTHSPCMLIGLMTGLHDKIAVQDIGIDNVTDADGLAVGRPSGFVGKTMEPFLSGDYTVSDEELYRLLKELADTENI
YLEPSALAGMIGPVRVCKEDAYLQKQQLMEKVQKGTHIVWGTGGSMVPEDVMNGYYKTGEALTILEK

Specific function: Unknown

COG id: COG3048

COG function: function code E; D-serine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the serine/threonine dehydratase family. DsdA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788708, Length=438, Percent_Identity=62.3287671232877, Blast_Score=543, Evalue=1e-155,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011780
- InterPro:   IPR001926
- InterPro:   IPR000634 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.3.1.18 [H]

Molecular weight: Translated: 52224; Mature: 52093

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00165 DEHYDRATASE_SER_THR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDLVRQQFIDFYKNFKPGRGMKEIEKLKEEYPLLNKLIETEEVLWVNPNMEKYETAIK
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHC
DSPLSEENVKDAKERLKRFASYIAKVFPETKETKGIIESPLLKIPSMKQALEKNYEQPIL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCCCCHHHHHHCCCCCCHH
GELLLKCDSHLPISGSIKARGGIYEVLKHAEQLALQHGMLTEEDDYSILDSDTCREFFAK
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
YSIAVGSTGNLGLSIGIMSAKLGFNVTVHMSADAKQWKKDLLRSKGVNVIEYEADYSKAV
HHEEECCCCCCEEEEEEEEEECCCEEEEEECCCHHHHHHHHHHHCCCCEEEECCHHHHHH
EEGRRQADADPSCYFVDDENSHDLFLGYAVAASRLQKQLEELEIIVDEEHPLFVYLPCGV
HHHHHHCCCCCCEEEECCCCCCCEEHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEECCC
GGGPGGVAFGLKLLYKDNVHCFFAEPTHSPCMLIGLMTGLHDKIAVQDIGIDNVTDADGL
CCCCCHHHHHHHHEEECCEEEEEECCCCCHHHHHHHHHCCCHHHEEEECCCCCCCCCCCC
AVGRPSGFVGKTMEPFLSGDYTVSDEELYRLLKELADTENIYLEPSALAGMIGPVRVCKE
EECCCCCCCCCCHHHHHCCCCEECHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHH
DAYLQKQQLMEKVQKGTHIVWGTGGSMVPEDVMNGYYKTGEALTILEK
HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCEEEEECC
>Mature Secondary Structure 
AFDLVRQQFIDFYKNFKPGRGMKEIEKLKEEYPLLNKLIETEEVLWVNPNMEKYETAIK
CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHC
DSPLSEENVKDAKERLKRFASYIAKVFPETKETKGIIESPLLKIPSMKQALEKNYEQPIL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCCCCHHHHHHCCCCCCHH
GELLLKCDSHLPISGSIKARGGIYEVLKHAEQLALQHGMLTEEDDYSILDSDTCREFFAK
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
YSIAVGSTGNLGLSIGIMSAKLGFNVTVHMSADAKQWKKDLLRSKGVNVIEYEADYSKAV
HHEEECCCCCCEEEEEEEEEECCCEEEEEECCCHHHHHHHHHHHCCCCEEEECCHHHHHH
EEGRRQADADPSCYFVDDENSHDLFLGYAVAASRLQKQLEELEIIVDEEHPLFVYLPCGV
HHHHHHCCCCCCEEEECCCCCCCEEHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEECCC
GGGPGGVAFGLKLLYKDNVHCFFAEPTHSPCMLIGLMTGLHDKIAVQDIGIDNVTDADGL
CCCCCHHHHHHHHEEECCEEEEEECCCCCHHHHHHHHHCCCHHHEEEECCCCCCCCCCCC
AVGRPSGFVGKTMEPFLSGDYTVSDEELYRLLKELADTENIYLEPSALAGMIGPVRVCKE
EECCCCCCCCCCHHHHHCCCCEECHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHH
DAYLQKQQLMEKVQKGTHIVWGTGGSMVPEDVMNGYYKTGEALTILEK
HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA