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The map label for this gene is ypsC [H]

Identifier: 118477109

GI number: 118477109

Start: 1549094

End: 1550239

Strand: Direct

Name: ypsC [H]

Synonym: BALH_1410

Alternate gene names: 118477109

Gene position: 1549094-1550239 (Clockwise)

Preceding gene: 118477108

Following gene: 118477110

Centisome position: 29.47

GC content: 38.74

Gene sequence:

>1146_bases
ATGCAAATGGGAAAAGTTACTTTAATCGCAACAGCGGCAATGGGTATTGAAGCTTTAGTTGCCCGAGAAGTTCGTGACCT
TGGTTATGAATGCCAAGTAGAAAACAGCAAAGTAACATTTGAAGCAGATGAAAAGGCGATTTGTCGCACGAATTTATGGT
TACGTACTGCGGACCGTGTGAAAATTAAAGTTGGCGAATTTAAAGCGACAACATTTGATGAGCTGTTTGAGAAAACGAAA
GCATTAAACTGGGGAGATTATATTCCAGAAAACGGTGAGTTCCCTGTTATCGGTAAATCTTTAAAATCTGAGTTATTCAG
TGTTTCGGATTGCCAACGTATCGTTAAAAAGGCTGTCGTTGAAAAATTAAAAACAACATATAAACGTACAACTTGGTTTG
AAGAAGATGGCCCGTTATTCCGTATTGAGATTGCGATGTTAAAAGATATCGCAACATTAACAATTGATGCGAGCGGTGTT
GGACTTCATAAACGTGGATACCGCGTGGATCAAGGAGAAGCTCCTTTAAAAGAAACATTAGCCGCGTCTTTAATTAAATT
AACAAACTGGAAGCCAGATCGTCCTTTCGTGGATCCTTTCTGCGGATCAGGTACAATTCCGATTGAAGCAGCATTAATTG
GACAAAATATTGCACCAGGATTTAACCGTGGCTTTGCATCGGATGAATGGGGCTGGGTTGGTAAACAAAACTGGCGTGAA
GCTCGTCAAGAAGCTGAAGATTTAGCGAACTATGATCAACCATTGCAAATCATTGGATCAGATATTGATCATCGTATGAT
TCGAGTTGCTCAAGATAACGCAGAAGAAGTTGGTTTAGGTGATTTAATTACATTTAAACAAATGCAAGTAAAAGATTTCA
CAACAAAAGAGGATTATGGCTATGTTGTAACGAATCCTCCATACGGAGAACGTTTAAGTGAAAAAGCACTTGTTGAACAA
CTGTATAAAGAAATGGGACAAGTATTCCGTCCATTAGATACATGGTCGGCATATGTATTAACAAGTTACGAAGCATTTGA
GAAGTGCTATGGAAAAGATGCATCGAAGAAGCGTAAACTATTTAACGGATTTATCCGTACAGATTACTACCAATACTTCG
GAAAACGTCCACCTCGTAATTCATAG

Upstream 100 bases:

>100_bases
ATTATGAGTTAAAATGGTTAATGAGAAAATTCTTCGTAAAATGTAATGATTAATAGGATAAATGGCTATTAATTATTGTT
TGAATATACATAAGAGGTGA

Downstream 100 bases:

>100_bases
TATAAAACTACTCCAGCGCGCATATACTGGCTATTATGTAATGCGTAAAGGAGGAACTAATATGGATAGTTTCCAATTAT
CAATGATTCAAAAGGCTATT

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MQMGKVTLIATAAMGIEALVAREVRDLGYECQVENSKVTFEADEKAICRTNLWLRTADRVKIKVGEFKATTFDELFEKTK
ALNWGDYIPENGEFPVIGKSLKSELFSVSDCQRIVKKAVVEKLKTTYKRTTWFEEDGPLFRIEIAMLKDIATLTIDASGV
GLHKRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRGFASDEWGWVGKQNWRE
ARQEAEDLANYDQPLQIIGSDIDHRMIRVAQDNAEEVGLGDLITFKQMQVKDFTTKEDYGYVVTNPPYGERLSEKALVEQ
LYKEMGQVFRPLDTWSAYVLTSYEAFEKCYGKDASKKRKLFNGFIRTDYYQYFGKRPPRNS

Sequences:

>Translated_381_residues
MQMGKVTLIATAAMGIEALVAREVRDLGYECQVENSKVTFEADEKAICRTNLWLRTADRVKIKVGEFKATTFDELFEKTK
ALNWGDYIPENGEFPVIGKSLKSELFSVSDCQRIVKKAVVEKLKTTYKRTTWFEEDGPLFRIEIAMLKDIATLTIDASGV
GLHKRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRGFASDEWGWVGKQNWRE
ARQEAEDLANYDQPLQIIGSDIDHRMIRVAQDNAEEVGLGDLITFKQMQVKDFTTKEDYGYVVTNPPYGERLSEKALVEQ
LYKEMGQVFRPLDTWSAYVLTSYEAFEKCYGKDASKKRKLFNGFIRTDYYQYFGKRPPRNS
>Mature_381_residues
MQMGKVTLIATAAMGIEALVAREVRDLGYECQVENSKVTFEADEKAICRTNLWLRTADRVKIKVGEFKATTFDELFEKTK
ALNWGDYIPENGEFPVIGKSLKSELFSVSDCQRIVKKAVVEKLKTTYKRTTWFEEDGPLFRIEIAMLKDIATLTIDASGV
GLHKRGYRVDQGEAPLKETLAASLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRGFASDEWGWVGKQNWRE
ARQEAEDLANYDQPLQIIGSDIDHRMIRVAQDNAEEVGLGDLITFKQMQVKDFTTKEDYGYVVTNPPYGERLSEKALVEQ
LYKEMGQVFRPLDTWSAYVLTSYEAFEKCYGKDASKKRKLFNGFIRTDYYQYFGKRPPRNS

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=372, Percent_Identity=33.6021505376344, Blast_Score=196, Evalue=3e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 43367; Mature: 43367

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQMGKVTLIATAAMGIEALVAREVRDLGYECQVENSKVTFEADEKAICRTNLWLRTADRV
CCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCHHHHHCCEEEECCEE
KIKVGEFKATTFDELFEKTKALNWGDYIPENGEFPVIGKSLKSELFSVSDCQRIVKKAVV
EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHCHHHHHHHHHHHHH
EKLKTTYKRTTWFEEDGPLFRIEIAMLKDIATLTIDASGVGLHKRGYRVDQGEAPLKETL
HHHHHHHHHCCEECCCCCEEEEEHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHH
AASLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRGFASDEWGWVGKQNWRE
HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
ARQEAEDLANYDQPLQIIGSDIDHRMIRVAQDNAEEVGLGDLITFKQMQVKDFTTKEDYG
HHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
YVVTNPPYGERLSEKALVEQLYKEMGQVFRPLDTWSAYVLTSYEAFEKCYGKDASKKRKL
EEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
FNGFIRTDYYQYFGKRPPRNS
HHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQMGKVTLIATAAMGIEALVAREVRDLGYECQVENSKVTFEADEKAICRTNLWLRTADRV
CCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCHHHHHCCEEEECCEE
KIKVGEFKATTFDELFEKTKALNWGDYIPENGEFPVIGKSLKSELFSVSDCQRIVKKAVV
EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHHHHHCHHHHHHHHHHHHH
EKLKTTYKRTTWFEEDGPLFRIEIAMLKDIATLTIDASGVGLHKRGYRVDQGEAPLKETL
HHHHHHHHHCCEECCCCCEEEEEHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCHHHHH
AASLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRGFASDEWGWVGKQNWRE
HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
ARQEAEDLANYDQPLQIIGSDIDHRMIRVAQDNAEEVGLGDLITFKQMQVKDFTTKEDYG
HHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
YVVTNPPYGERLSEKALVEQLYKEMGQVFRPLDTWSAYVLTSYEAFEKCYGKDASKKRKL
EEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
FNGFIRTDYYQYFGKRPPRNS
HHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]