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The map label for this gene is ycgE [H]

Identifier: 118477044

GI number: 118477044

Start: 1488181

End: 1489071

Strand: Direct

Name: ycgE [H]

Synonym: BALH_1345

Alternate gene names: 118477044

Gene position: 1488181-1489071 (Clockwise)

Preceding gene: 118477043

Following gene: 118477045

Centisome position: 28.31

GC content: 34.23

Gene sequence:

>891_bases
ATGCGGAGGGAAATGATGCCAACTCTAAACGGAAAATATAACATAAAAGCTGTTTCAAAAATAATTGGAGTTCAACCAAG
TACGCTTCGTGCATGGGAAAGAAGATATCAAATGATTGCCCCAAAGCGGAATCATGCGGGGCATCGATTATATACAGAAG
AGCATATTCAAATTTTGAAATGGTTAATGGACAAGGTTTCTTCCGGCATGATGATTGGACAAGCAGTTCAATTATTAGAA
GGGAATCGTTTGCAGAATAGTGTTCAAAATGAAATACATTACGATAGAGAAGTTGTTTTAGTGGACGATTTACTACAAGC
TTTGTTAAAATTTGATGAAATTACAACTTCTGCATTGTTAAACGAGGCTTTTAGTATTTATGCAACAGAAAAAGTTATCG
CAAGTATTGTTCTTCAAGTGTCAAATAAATTGTTAACGTTAAAAAATAATAATGAAGTTACAATGGTGCAATTCCAATAT
GTCGTATCATTTTTACAAACGCGTCTAGGAATGGTATATCATAATGCATCATCGTTTTCTCCTATACACAAAGTTGTTGT
GTTAGAAAGTAATATGTTGAAAGGGTTTGTTTTCTCAACGTATTTACGATTAAAAGGATATGAGGTGATATATATTAGGG
CAAGCTTAGCGGAAGATAGTATTACGTTAGCTGTTGAGCAAATAAGACCTAAATATGTAGTAATCTCTTTTGATGACGGA
CGAGAACTGAAGAACGCAATGAGCTACTTGAATTTGTTGCAAGAAAAAAGTGAAAACCTTTCTGTTGGGGTTATAGGAGA
AATAGGTGCTGGAGATCAGTTGAACATTCAAACAAGCCTAATTGGTGATACGAAAGAAGAATGGGATGATTGGTTAAAAA
TGTTAGAATAG

Upstream 100 bases:

>100_bases
ATAAGCATTCAAATATAACTCTTTTTGTTAGTAATGGGTATGGAACAACGTTGATTCCACTTCGCTTCCGAGCACCTGCT
CAAACACATATTATTACGTT

Downstream 100 bases:

>100_bases
TTGTTCGAAAAGAACCATCTATTTTCTATTTCATATAATAAAAATTATATTCATTGGTTGCGTAGGGAGGGTATGAGATG
AGGCTGGAACGATTAAATTA

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MRREMMPTLNGKYNIKAVSKIIGVQPSTLRAWERRYQMIAPKRNHAGHRLYTEEHIQILKWLMDKVSSGMMIGQAVQLLE
GNRLQNSVQNEIHYDREVVLVDDLLQALLKFDEITTSALLNEAFSIYATEKVIASIVLQVSNKLLTLKNNNEVTMVQFQY
VVSFLQTRLGMVYHNASSFSPIHKVVVLESNMLKGFVFSTYLRLKGYEVIYIRASLAEDSITLAVEQIRPKYVVISFDDG
RELKNAMSYLNLLQEKSENLSVGVIGEIGAGDQLNIQTSLIGDTKEEWDDWLKMLE

Sequences:

>Translated_296_residues
MRREMMPTLNGKYNIKAVSKIIGVQPSTLRAWERRYQMIAPKRNHAGHRLYTEEHIQILKWLMDKVSSGMMIGQAVQLLE
GNRLQNSVQNEIHYDREVVLVDDLLQALLKFDEITTSALLNEAFSIYATEKVIASIVLQVSNKLLTLKNNNEVTMVQFQY
VVSFLQTRLGMVYHNASSFSPIHKVVVLESNMLKGFVFSTYLRLKGYEVIYIRASLAEDSITLAVEQIRPKYVVISFDDG
RELKNAMSYLNLLQEKSENLSVGVIGEIGAGDQLNIQTSLIGDTKEEWDDWLKMLE
>Mature_296_residues
MRREMMPTLNGKYNIKAVSKIIGVQPSTLRAWERRYQMIAPKRNHAGHRLYTEEHIQILKWLMDKVSSGMMIGQAVQLLE
GNRLQNSVQNEIHYDREVVLVDDLLQALLKFDEITTSALLNEAFSIYATEKVIASIVLQVSNKLLTLKNNNEVTMVQFQY
VVSFLQTRLGMVYHNASSFSPIHKVVVLESNMLKGFVFSTYLRLKGYEVIYIRASLAEDSITLAVEQIRPKYVVISFDDG
RELKNAMSYLNLLQEKSENLSVGVIGEIGAGDQLNIQTSLIGDTKEEWDDWLKMLE

Specific function: Controls the expression of 6 small proteins that may play a role in biofilm maturation. Binds to and represses the operator of the ycgZ-ymgA-ariR-ymgC operon, it also regulates yliL and ynaK. Binding is antagonized by YcgF upon blue-light (470 nm) irradia

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787409, Length=146, Percent_Identity=28.7671232876712, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551 [H]

Pfam domain/function: PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 33851; Mature: 33851

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRREMMPTLNGKYNIKAVSKIIGVQPSTLRAWERRYQMIAPKRNHAGHRLYTEEHIQILK
CCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
WLMDKVSSGMMIGQAVQLLEGNRLQNSVQNEIHYDREVVLVDDLLQALLKFDEITTSALL
HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHH
NEAFSIYATEKVIASIVLQVSNKLLTLKNNNEVTMVQFQYVVSFLQTRLGMVYHNASSFS
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHEECCCCCC
PIHKVVVLESNMLKGFVFSTYLRLKGYEVIYIRASLAEDSITLAVEQIRPKYVVISFDDG
CHHEEEEEECCHHHHHHHHHHHHHCCEEEEEEEEECCCCHHEEEHHHCCCCEEEEEECCC
RELKNAMSYLNLLQEKSENLSVGVIGEIGAGDQLNIQTSLIGDTKEEWDDWLKMLE
HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHCC
>Mature Secondary Structure
MRREMMPTLNGKYNIKAVSKIIGVQPSTLRAWERRYQMIAPKRNHAGHRLYTEEHIQILK
CCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
WLMDKVSSGMMIGQAVQLLEGNRLQNSVQNEIHYDREVVLVDDLLQALLKFDEITTSALL
HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHH
NEAFSIYATEKVIASIVLQVSNKLLTLKNNNEVTMVQFQYVVSFLQTRLGMVYHNASSFS
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEHHHHHHHHHHHHHHHEECCCCCC
PIHKVVVLESNMLKGFVFSTYLRLKGYEVIYIRASLAEDSITLAVEQIRPKYVVISFDDG
CHHEEEEEECCHHHHHHHHHHHHHCCEEEEEEEEECCCCHHEEEHHHCCCCEEEEEECCC
RELKNAMSYLNLLQEKSENLSVGVIGEIGAGDQLNIQTSLIGDTKEEWDDWLKMLE
HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]