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The map label for this gene is ypbD [H]

Identifier: 118477041

GI number: 118477041

Start: 1486246

End: 1486860

Strand: Direct

Name: ypbD [H]

Synonym: BALH_1342

Alternate gene names: 118477041

Gene position: 1486246-1486860 (Clockwise)

Preceding gene: 118477040

Following gene: 118477042

Centisome position: 28.27

GC content: 34.47

Gene sequence:

>615_bases
TTGGGAAACAGAGTTACAAAAGCTTTTCGGTCTAGAAAAGATGGGGGAATGATGAACATTCAAAGGCATAATATTGAAGA
TATGGGTCCGAAAGAAATAAGGCTGAATCTGTATATCACACAGTTCATTATTATTGGTATCGGTTGTTTACTAGCCTATA
TACTATTCCGAGATATAAAATCGGTGTATAGTCTATGGAAATGGGAACCGGTGTCTATACTTATAATAGGTGGCTTGTTA
GCAATTGGTATTGTGTTATTAGATTATGTTGCAATGCGGGTGTTTCCAGAGTCTTGGTTTGATGATGGTGGTATTAACGA
TAGGATGTTTCAAGGGATGTCAGTTATGCATCTACTCGTTATTACGTTCATTATCGGCTTTGCAGAAGAATTTTTATTTA
GAGGTGTAGTGCAGACGCACTTTGGAATTGTAATAGCGAGTTTTGTATTTGCAGTGTTACATATTCGGTATATAAAAAAG
CCATTTTTGTTTTGTTTCGTCTGTTTCATTAGTTTTGTCTTTGGTTACGTATTTGAATGGACAGGAAATTTGTTTATAAC
AATCTTTGCACACTTTCTTGTTGATTTTATAATGGGACTCCAATTAAGAAAATAA

Upstream 100 bases:

>100_bases
ACAGAAAAGAGGGCGAGTTAAAGAATTGCTGCGACTATTGTCATATTACAAAAACAGATTATAAAAAAAGACAAGCGCAA
CAATCGGATTTCGACTATAA

Downstream 100 bases:

>100_bases
ATGGAAGGTGGTGGTGAACAACATGAGGAAACGAATTCCTGATTTTGAAGAGGAATTAGAAGTTGAGCGAGTGGAAGAAA
AAGAAGGTTTACCGCCGCGT

Product: CAAX amino terminal protease family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MGNRVTKAFRSRKDGGMMNIQRHNIEDMGPKEIRLNLYITQFIIIGIGCLLAYILFRDIKSVYSLWKWEPVSILIIGGLL
AIGIVLLDYVAMRVFPESWFDDGGINDRMFQGMSVMHLLVITFIIGFAEEFLFRGVVQTHFGIVIASFVFAVLHIRYIKK
PFLFCFVCFISFVFGYVFEWTGNLFITIFAHFLVDFIMGLQLRK

Sequences:

>Translated_204_residues
MGNRVTKAFRSRKDGGMMNIQRHNIEDMGPKEIRLNLYITQFIIIGIGCLLAYILFRDIKSVYSLWKWEPVSILIIGGLL
AIGIVLLDYVAMRVFPESWFDDGGINDRMFQGMSVMHLLVITFIIGFAEEFLFRGVVQTHFGIVIASFVFAVLHIRYIKK
PFLFCFVCFISFVFGYVFEWTGNLFITIFAHFLVDFIMGLQLRK
>Mature_203_residues
GNRVTKAFRSRKDGGMMNIQRHNIEDMGPKEIRLNLYITQFIIIGIGCLLAYILFRDIKSVYSLWKWEPVSILIIGGLLA
IGIVLLDYVAMRVFPESWFDDGGINDRMFQGMSVMHLLVITFIIGFAEEFLFRGVVQTHFGIVIASFVFAVLHIRYIKKP
FLFCFVCFISFVFGYVFEWTGNLFITIFAHFLVDFIMGLQLRK

Specific function: Unknown

COG id: COG1266

COG function: function code R; Predicted metal-dependent membrane protease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003675 [H]

Pfam domain/function: PF02517 Abi [H]

EC number: NA

Molecular weight: Translated: 23635; Mature: 23504

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNRVTKAFRSRKDGGMMNIQRHNIEDMGPKEIRLNLYITQFIIIGIGCLLAYILFRDIK
CCCHHHHHHHCCCCCCCCCCHHCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHH
SVYSLWKWEPVSILIIGGLLAIGIVLLDYVAMRVFPESWFDDGGINDRMFQGMSVMHLLV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
ITFIIGFAEEFLFRGVVQTHFGIVIASFVFAVLHIRYIKKPFLFCFVCFISFVFGYVFEW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGNLFITIFAHFLVDFIMGLQLRK
HCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GNRVTKAFRSRKDGGMMNIQRHNIEDMGPKEIRLNLYITQFIIIGIGCLLAYILFRDIK
CCHHHHHHHCCCCCCCCCCHHCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHH
SVYSLWKWEPVSILIIGGLLAIGIVLLDYVAMRVFPESWFDDGGINDRMFQGMSVMHLLV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
ITFIIGFAEEFLFRGVVQTHFGIVIASFVFAVLHIRYIKKPFLFCFVCFISFVFGYVFEW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGNLFITIFAHFLVDFIMGLQLRK
HCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]