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The map label for this gene is tnpR [C]

Identifier: 118476844

GI number: 118476844

Start: 1286965

End: 1287636

Strand: Direct

Name: tnpR [C]

Synonym: BALH_1132

Alternate gene names: 118476844

Gene position: 1286965-1287636 (Clockwise)

Preceding gene: 118476842

Following gene: 118476845

Centisome position: 24.48

GC content: 36.31

Gene sequence:

>672_bases
TTGATACAAAATGAAGTGCTTGATATACTTAGATTACAATTGTCTCATATACATGTATCAAAAAAGGGTGAAATTCATAT
GAAATATGGTTATGGTCGTGTGTCATCAGCAGGTCAAAATTTAAGTGGACAAATTAAACAACTGCAAGAAGCAGGATGTG
ACACCATCTTTAAAGAGAAGGTCAGTGGAAGAAAGAAAGAAGATAGAGAGCAGTTCAATCTGCTCCTTGAGACGGTACAA
GAAGGTGACATTATTACTGTTACGAAGTTAGATAGGTTTGCCAGAAGTACAAAAGATGCTTTAAACACTATTGAATACTT
AAACAACAAAGGTGTTTCCCTTATTGTATTGAACATGGGTGGAGATAAGATTGATACAAGTACGGCAATTGGAAAATTAA
TGATTACTGTCTTATCTGGTATAGCTGAATTTGAAGCCGACATGATTAAGGAAAGGCAATTAGAGGGCATTGAAGAAGCC
AAGCGAAGAGGTGTCTATAAAGGAAGACCCAAGAAGTACACAGAGAATAACAGAGGTTTACAGTATGCACTTGAGTTATT
CCACAACAGAGCAACCAATAAGATGACTGTTAAAGAGATTGAAGAGATAACTAAAATAAGTAAGGCGACTCTTTATAGAG
CAGTAAGAGCACAGGGAGGTAATGTGGAATGA

Upstream 100 bases:

>100_bases
TAATTTTAACATTAAAAAGTTAATATATATAAGTTTCACTGTTATTGAGATTTTAGTTTCAAAGTAACGGTTATATTATG
TATCATTTGAGTACACCCTA

Downstream 100 bases:

>100_bases
TTATATATAAGGCGACCAACAGTGTTAATGGCAAGGTATACATTGGCTTGTCAACTCTGACACTTGAAGAAAGAATTAAA
GGGCATTACTATCATGCCAC

Product: resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MIQNEVLDILRLQLSHIHVSKKGEIHMKYGYGRVSSAGQNLSGQIKQLQEAGCDTIFKEKVSGRKKEDREQFNLLLETVQ
EGDIITVTKLDRFARSTKDALNTIEYLNNKGVSLIVLNMGGDKIDTSTAIGKLMITVLSGIAEFEADMIKERQLEGIEEA
KRRGVYKGRPKKYTENNRGLQYALELFHNRATNKMTVKEIEEITKISKATLYRAVRAQGGNVE

Sequences:

>Translated_223_residues
MIQNEVLDILRLQLSHIHVSKKGEIHMKYGYGRVSSAGQNLSGQIKQLQEAGCDTIFKEKVSGRKKEDREQFNLLLETVQ
EGDIITVTKLDRFARSTKDALNTIEYLNNKGVSLIVLNMGGDKIDTSTAIGKLMITVLSGIAEFEADMIKERQLEGIEEA
KRRGVYKGRPKKYTENNRGLQYALELFHNRATNKMTVKEIEEITKISKATLYRAVRAQGGNVE
>Mature_223_residues
MIQNEVLDILRLQLSHIHVSKKGEIHMKYGYGRVSSAGQNLSGQIKQLQEAGCDTIFKEKVSGRKKEDREQFNLLLETVQ
EGDIITVTKLDRFARSTKDALNTIEYLNNKGVSLIVLNMGGDKIDTSTAIGKLMITVLSGIAEFEADMIKERQLEGIEEA
KRRGVYKGRPKKYTENNRGLQYALELFHNRATNKMTVKEIEEITKISKATLYRAVRAQGGNVE

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=149, Percent_Identity=39.5973154362416, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI1787638, Length=191, Percent_Identity=31.9371727748691, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787827, Length=191, Percent_Identity=32.9842931937173, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 25161; Mature: 25161

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQNEVLDILRLQLSHIHVSKKGEIHMKYGYGRVSSAGQNLSGQIKQLQEAGCDTIFKEK
CCHHHHHHHHHHHHHHHEECCCCCEEEEECCCHHCCCCCCHHHHHHHHHHCCCHHHHHHH
VSGRKKEDREQFNLLLETVQEGDIITVTKLDRFARSTKDALNTIEYLNNKGVSLIVLNMG
HCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
GDKIDTSTAIGKLMITVLSGIAEFEADMIKERQLEGIEEAKRRGVYKGRPKKYTENNRGL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
QYALELFHNRATNKMTVKEIEEITKISKATLYRAVRAQGGNVE
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIQNEVLDILRLQLSHIHVSKKGEIHMKYGYGRVSSAGQNLSGQIKQLQEAGCDTIFKEK
CCHHHHHHHHHHHHHHHEECCCCCEEEEECCCHHCCCCCCHHHHHHHHHHCCCHHHHHHH
VSGRKKEDREQFNLLLETVQEGDIITVTKLDRFARSTKDALNTIEYLNNKGVSLIVLNMG
HCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
GDKIDTSTAIGKLMITVLSGIAEFEADMIKERQLEGIEEAKRRGVYKGRPKKYTENNRGL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
QYALELFHNRATNKMTVKEIEEITKISKATLYRAVRAQGGNVE
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8380148 [H]