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The map label for this gene is yjbM [H]

Identifier: 118476777

GI number: 118476777

Start: 1212940

End: 1213599

Strand: Direct

Name: yjbM [H]

Synonym: BALH_1060

Alternate gene names: 118476777

Gene position: 1212940-1213599 (Clockwise)

Preceding gene: 118476776

Following gene: 118476778

Centisome position: 23.07

GC content: 36.52

Gene sequence:

>660_bases
TTGATTTTGGTGGTGGTTGAAATGAATCGAAATTGGGAAGAATTTTTAGCACCTTACCATCAAGCGGTGGCAGAGCTGAA
AGTGAAACTAAAAGGAATGCGTACTCAATTTGCAATGTTAACAGAGCATTCTCCAATTGAGTTTGTAACAGGGAGGGTAA
AGTCGGTTGCAAGCATTATTGATAAAGCGGAGAAGAGAAATGTACCGTTAGACCGACTGAGAGAAGATATGCAAGACATC
GCAGGTCTTCGAATGATGTGTCAATTTGTTGATGAGATTAAGCCTGTTGTAGAATATCTTAGAAAACGAAATGACTTTGA
AATCGTGGAAGAGCGTGATTATGTCACGCAAAAGAAAGATAGTGGTTATCGTTCTTATCACGTTGTTATTAGTTATCCTG
TTCAAACAATTCAAGGAGAACAAAAAGTGTTGGTAGAAATCCAAATACGTACGTTAGCAATGAACTTTTGGGCAACAATT
GAGCATTCTTTAAATTATAAATATAGTGGACGTTTTCCTGAAGATATTAAAATACGCTTGCAACGTGCAGCAGAAGCAGC
ATTTTTATTGGATGAAGAAATGTCTTCTATTCGTCTTGAAATTCAAGAAGCACAGAAAGCTTTTTCAAGAAAGCAAGAAA
CGAAAGATTCTGAATCATAA

Upstream 100 bases:

>100_bases
AGAAGAAGTAGAATATTTAGTTGAAAATATTGAAGGTAATGCAAATTACGGAGAAGAACTAGTAACTGCTGTAGAAAAAG
TATTTCTATAAGCAAATGGA

Downstream 100 bases:

>100_bases
ACTAAAGGGTGTTGGGCGATGAAATTTACAATTATGTCAAAGGGAGATCAATCATCAGATACACTGGCAAGCACGATGAA
AGAATACTTGCTAGATTTTG

Product: GTP pyrophosphokinase

Products: NA

Alternate protein names: (p)ppGpp synthase yjbM; Small alarmone synthase 1; SAS 1 [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MILVVVEMNRNWEEFLAPYHQAVAELKVKLKGMRTQFAMLTEHSPIEFVTGRVKSVASIIDKAEKRNVPLDRLREDMQDI
AGLRMMCQFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKDSGYRSYHVVISYPVQTIQGEQKVLVEIQIRTLAMNFWATI
EHSLNYKYSGRFPEDIKIRLQRAAEAAFLLDEEMSSIRLEIQEAQKAFSRKQETKDSES

Sequences:

>Translated_219_residues
MILVVVEMNRNWEEFLAPYHQAVAELKVKLKGMRTQFAMLTEHSPIEFVTGRVKSVASIIDKAEKRNVPLDRLREDMQDI
AGLRMMCQFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKDSGYRSYHVVISYPVQTIQGEQKVLVEIQIRTLAMNFWATI
EHSLNYKYSGRFPEDIKIRLQRAAEAAFLLDEEMSSIRLEIQEAQKAFSRKQETKDSES
>Mature_219_residues
MILVVVEMNRNWEEFLAPYHQAVAELKVKLKGMRTQFAMLTEHSPIEFVTGRVKSVASIIDKAEKRNVPLDRLREDMQDI
AGLRMMCQFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKDSGYRSYHVVISYPVQTIQGEQKVLVEIQIRTLAMNFWATI
EHSLNYKYSGRFPEDIKIRLQRAAEAAFLLDEEMSSIRLEIQEAQKAFSRKQETKDSES

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a

COG id: COG2357

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the relA/spoT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007685 [H]

Pfam domain/function: PF04607 RelA_SpoT [H]

EC number: =2.7.6.5 [H]

Molecular weight: Translated: 25711; Mature: 25711

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILVVVEMNRNWEEFLAPYHQAVAELKVKLKGMRTQFAMLTEHSPIEFVTGRVKSVASII
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
DKAEKRNVPLDRLREDMQDIAGLRMMCQFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKD
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
SGYRSYHVVISYPVQTIQGEQKVLVEIQIRTLAMNFWATIEHSLNYKYSGRFPEDIKIRL
CCCEEEEEEEECCHHHHCCCCEEEEEEEHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHH
QRAAEAAFLLDEEMSSIRLEIQEAQKAFSRKQETKDSES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MILVVVEMNRNWEEFLAPYHQAVAELKVKLKGMRTQFAMLTEHSPIEFVTGRVKSVASII
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
DKAEKRNVPLDRLREDMQDIAGLRMMCQFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKD
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
SGYRSYHVVISYPVQTIQGEQKVLVEIQIRTLAMNFWATIEHSLNYKYSGRFPEDIKIRL
CCCEEEEEEEECCHHHHCCCCEEEEEEEHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHH
QRAAEAAFLLDEEMSSIRLEIQEAQKAFSRKQETKDSES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]