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The map label for this gene is rnmV [H]

Identifier: 118475812

GI number: 118475812

Start: 44725

End: 45294

Strand: Direct

Name: rnmV [H]

Synonym: BALH_0036

Alternate gene names: 118475812

Gene position: 44725-45294 (Clockwise)

Preceding gene: 118475811

Following gene: 118475813

Centisome position: 0.85

GC content: 38.25

Gene sequence:

>570_bases
GTGGAGGCAAGCATGAAAATTAAAGAGATTATCGTTGTAGAAGGTAAAGATGATACAGTTGCGATTAAGCGTGCTGTTGA
TGCGGATACAATTGAAACGAACGGTTCAGCAATCGGTGATCATGTTATTGAACAAGTTAAATTAGCGCTACAAAAACGAG
GCGTTATTATTTTCACAGACCCGGATTATCCTGGAGAGCGTATTCGAAAAATTATTTCTGATAAGGTGCCTGGATGTAAA
CATGCTTTTTTACCGAAGGAAGAAGCACTTGCTAAGAGGAAAAAAGGTGTTGGGATTGAACATGCTTCTAATGAATCAAT
TCGCCGTGCTTTAGAGAATATACATGAAGAAATGGAAGCTTACACAAGTGAAATCAGTTGGAGCGATCTAGTCGATGCAG
GTTTAGTGGGCGGAGAAATGGCAAAGAGTCGCAGAGAAAGAATGGGTAAGCTATTAAAGATTGGTTATACAAACGCAAAA
CAGTTACATAAACGTTTACAAATGTTTCAAGTCTCAAAAGAATCATTTGCAGAAGCTTATAAGCAAGTCATACAGGAGGA
AAGAAAATGA

Upstream 100 bases:

>100_bases
CAAAGTTTTGGACATTCTATTTTTTAAAATGTAAGAATGGGGAAAATAATAATGGAAAAGTCGTCATTTTTTTGTTTTAC
TAAGTAGAGACGAAACGAGT

Downstream 100 bases:

>100_bases
AGGATATCGCAACGCCAAATCGTACGAAAGATATTGTTGAAAAGTATGGATTTTCATTCAAAAAAAGTTTAGGACAAAAT
TTTTTAATTGATACGAATGT

Product: ribonuclease M5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MEASMKIKEIIVVEGKDDTVAIKRAVDADTIETNGSAIGDHVIEQVKLALQKRGVIIFTDPDYPGERIRKIISDKVPGCK
HAFLPKEEALAKRKKGVGIEHASNESIRRALENIHEEMEAYTSEISWSDLVDAGLVGGEMAKSRRERMGKLLKIGYTNAK
QLHKRLQMFQVSKESFAEAYKQVIQEERK

Sequences:

>Translated_189_residues
MEASMKIKEIIVVEGKDDTVAIKRAVDADTIETNGSAIGDHVIEQVKLALQKRGVIIFTDPDYPGERIRKIISDKVPGCK
HAFLPKEEALAKRKKGVGIEHASNESIRRALENIHEEMEAYTSEISWSDLVDAGLVGGEMAKSRRERMGKLLKIGYTNAK
QLHKRLQMFQVSKESFAEAYKQVIQEERK
>Mature_189_residues
MEASMKIKEIIVVEGKDDTVAIKRAVDADTIETNGSAIGDHVIEQVKLALQKRGVIIFTDPDYPGERIRKIISDKVPGCK
HAFLPKEEALAKRKKGVGIEHASNESIRRALENIHEEMEAYTSEISWSDLVDAGLVGGEMAKSRRERMGKLLKIGYTNAK
QLHKRLQMFQVSKESFAEAYKQVIQEERK

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 21277; Mature: 21277

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEASMKIKEIIVVEGKDDTVAIKRAVDADTIETNGSAIGDHVIEQVKLALQKRGVIIFTD
CCCCCEEEEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEC
PDYPGERIRKIISDKVPGCKHAFLPKEEALAKRKKGVGIEHASNESIRRALENIHEEMEA
CCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
YTSEISWSDLVDAGLVGGEMAKSRRERMGKLLKIGYTNAKQLHKRLQMFQVSKESFAEAY
HHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
KQVIQEERK
HHHHHHHCC
>Mature Secondary Structure
MEASMKIKEIIVVEGKDDTVAIKRAVDADTIETNGSAIGDHVIEQVKLALQKRGVIIFTD
CCCCCEEEEEEEEECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEC
PDYPGERIRKIISDKVPGCKHAFLPKEEALAKRKKGVGIEHASNESIRRALENIHEEMEA
CCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
YTSEISWSDLVDAGLVGGEMAKSRRERMGKLLKIGYTNAKQLHKRLQMFQVSKESFAEAY
HHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
KQVIQEERK
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]