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The map label for this gene is abrB [H]

Identifier: 118475809

GI number: 118475809

Start: 40832

End: 41212

Strand: Reverse

Name: abrB [H]

Synonym: BALH_0033

Alternate gene names: 118475809

Gene position: 41212-40832 (Counterclockwise)

Preceding gene: 118475915

Following gene: 118475794

Centisome position: 0.78

GC content: 32.55

Gene sequence:

>381_bases
TTGGTATCATATGTCCATAGGGTATTTTGTCGAAAAATGACGAATCTAAAAATAGACTCGAAACTTATAAACTATTTCTT
TAGGAGGAAAAGAATTATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAAT
TACGCCGTACTTTAGGTATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATAT
AAACCAAACATGACTTGCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAG
CAAAGAAGGCGCTGAGCAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Upstream 100 bases:

>100_bases
ATAGTAGAAATTAATCCCATTCTATTATATATAAGAAGTAAGAAATCTATAAATCTTTTTAAAAAATATAGAATTAAAGA
ATTGACGGAAATGTAAATGA

Downstream 100 bases:

>100_bases
GCTTCTCAATTATGAGAAGCTTATTTTTTATCGACATGATAGATTTGATATACATCGCGTTTCGACAAATCTCGATCTTT
AGCGACTGTTTTTATCGCCT

Product: AbrB family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MVSYVHRVFCRKMTNLKIDSKLINYFFRRKRIMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKY
KPNMTCQVTGEVSDGNLSLAEGKIILSKEGAEQILNELQDYIETAK

Sequences:

>Translated_126_residues
MVSYVHRVFCRKMTNLKIDSKLINYFFRRKRIMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKY
KPNMTCQVTGEVSDGNLSLAEGKIILSKEGAEQILNELQDYIETAK
>Mature_126_residues
MVSYVHRVFCRKMTNLKIDSKLINYFFRRKRIMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKY
KPNMTCQVTGEVSDGNLSLAEGKIILSKEGAEQILNELQDYIETAK

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 14536; Mature: 14536

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSYVHRVFCRKMTNLKIDSKLINYFFRRKRIMKSTGIVRKVDELGRVVIPIELRRTLGI
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEHHHHHCC
AEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAEQILNELQD
CCCCCEEEEECCCEEEEEECCCCCEEEEEEEECCCCEEEECCEEEEECCCHHHHHHHHHH
YIETAK
HHHHCC
>Mature Secondary Structure
MVSYVHRVFCRKMTNLKIDSKLINYFFRRKRIMKSTGIVRKVDELGRVVIPIELRRTLGI
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEHHHHHCC
AEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAEQILNELQD
CCCCCEEEEECCCEEEEEECCCCCEEEEEEEECCCCEEEECCEEEEECCCHHHHHHHHHH
YIETAK
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]