| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is uvrA [H]
Identifier: 117922028
GI number: 117922028
Start: 4313144
End: 4315996
Strand: Direct
Name: uvrA [H]
Synonym: Shewana3_3592
Alternate gene names: 117922028
Gene position: 4313144-4315996 (Clockwise)
Preceding gene: 117922020
Following gene: 117922029
Centisome position: 86.75
GC content: 52.33
Gene sequence:
>2853_bases ATGGATAAGATTGAAATACGCGGCGCACGGACCCACAATCTCAAAAATATCAACCTGACTATCCCAAGGGATAAGTTAAT CGTTATCACAGGGTTATCGGGTTCAGGCAAATCTTCCCTAGCATTTGATACCTTATATGCCGAAGGCCAACGACGTTATG TTGAGTCTCTTTCTGCCTATGCCCGCCAATTCTTAAGCTTGATGGAAAAGCCCGATGTCGACCATATCGAAGGCTTGAGC CCGGCGATTTCCATCGAACAAAAATCGACATCCCATAACCCGCGCTCTACCGTCGGGACTATTACCGAAATTTACGACTA TCTGCGTCTGTTGTTTGCCCGCGTGGGAGAACCACGCTGCCCAACTCACGGCCAACCACTTGCGGCGCAAACCGTGAGTC AGATGGTCGATAAAGTGTTAGAAATGCCCGAAGACAGCCGCTTGATGCTGCTGGCGCCCGTAGTCAATGGTCGTAAGGGT GAGCACGTAAAATTACTCGAAGGCTTATCGGCGCAGGGCTATATCCGCGCCCGAATCGACGGTGAAGTCTGCGACTTAAC CGATCCACCAGCACTCGATTTACACGTTAAGCACACTATCGAAGTGGTGGTCGACCGCTTTAAAGTCCGCAGCGATATCC AGCAGCGTCTCGCCGAATCCTTTGAAACCGCGCTCGAACTCTCTGGCGGGATTGCCGTGGTCGCCAGCATGGATGAAGGC ACCACAGAAGAATTAATCTTCTCAGCAAATTTTGCCTGTCCGCACTGCGGTTATTCGATGGCAGAGCTTGAGCCACGGAT TTTCTCCTTTAACAATCCGGCGGGCGCTTGCCCAACCTGTGATGGTTTAGGGGTACAACAATTTTTCGACCCAGACAGAG TGATCACTAACCCTGAGTTATCCCTTGCGGGCGGCGCGATTCGTGGCTGGGATAGACGTAACTTTTATTACTTCCAGATG CTGAGTTCACTCGCCGACCACTATAAGTTCGATGTCGAAGTGCCCTTCGAACAGCTGTCGGATAAGGTGAGAAAAATCGT CCTCTACGGCTCAGGCAAAGACAGTATCGCCTTCAAATACATCAACGACCGTGGCGATGTGGTGGTGCGTAATCACCCCT TCGAAGGCATCTTAAATAATATGGACCGGCGCTACCGCGAGACCGAAAGCAACGCGGTACGCGAAGAATTAGCCAAGTTT ATCAACACTCAAGCCTGCCAAAGCTGTGGCGGCTCGCGCCTGCGTGAAGAAGCCCGTAACGTGTTTATTGGCGATCTTAA CCTGCCCAAACTCACCGTTTGGTCGATAGGTGAAGCCCTCGAATACTTCGACAAACTCGAGTTCAGCGGCCAAAAGGCAC AGATCGCCGAGAAGGTACTGAAGGAAGTACGCGATCGCTTAGGCTTCCTCGTTAACGTCGGCCTCAACTATTTAAGTCTG TCGCGTTCGGCCGAAACTCTATCAGGCGGTGAAGCGCAGCGTATTCGTCTCGCCAGCCAAATCGGCGCAGGACTCGTTGG TGTGATGTACGTGCTCGACGAGCCATCTATCGGCTTGCACCAACGGGATAACGAGCGGTTATTGCAGACCTTAATCCACT TGCGGGATTTAGGTAACACAGTGATCGTGGTGGAGCATGATGAAGATGCGATTCGTATCGCGGATCATATTATCGATATC GGCCCCGGCGCTGGTGTACACGGCGGCGAAGTGATTTGCGACGGTCCGATTGAGAAAATTGTCGCCTGCGACGAGTCCGT CACAGGTCAATATATTTCTGGCAAACGCAATATCCATATCAGCACCCCACGTACGCCTTACGACCCCAAACAAGTGATTG AGCTTTACGGCGCCCGTGGCAATAACCTACGCAACGTCGACTTAACGGTTCCCGTAGGCCTGTTCACCTGCGTGACCGGA GTATCGGGTTCAGGTAAATCGACGCTGATTAACGACACCTTTTTTAGAATTGCCCATAAGCAACTCAACGGTGCCACAGT CGATGAGCCCGCACCTTACGATCGCATCGTCGGCATGGAGCAATGCGATAAAGTGGTCGATATCGACCAAAGCCCGATTG GTCGTACTCCGCGCTCTAACCCCGCCACTTATACTGGCATCTTTACGCCTATTCGGGAGATTTTTGCCGCGACGCAGGAA TCCCGTACCCGTGGTTATCAGGTGGGCCGCTTCTCCTTTAACGTGAAAGGCGGTCGCTGTGAGGCCTGCCAAGGCGATGG CTTAATTAAGGTCGAAATGCACTTCCTGCCCGATGTGTATGTGCCCTGCGATGCCTGTAAAGGTAAACGCTATAACCGCG AAACCTTAGAGGTGCGCTACAAAGGCAAGAACATCCACGAAGTGCTGCAAATGACAGTGGAAGATGCGCGGGAGTTTTTC GATGCAGTGCCAGCCATTGCTCGCAAACTGCAAACCCTAATGGATGTAGGTTTGTCCTACGTACGTTTAGGCCAGAGCGC GACCACGCTGTCGGGCGGTGAAGCCCAGCGGGTGAAACTTGCGAAGGAGCTCTCTAAGCGCGATACGGGTAAGACCTTGT ATATTCTGGATGAACCGACAACGGGCTTGCACTTTGCCGATATCCAATTACTGCTCGATGTACTGCATCGCCTCAAATCC CACGGCAATACTATCGTGGTGATTGAGCATAATCTGGATGTGATTAAAACCGCAGACTGGATTATCGACTTAGGCCCAGA AGGCGGAGGCGGCGGCGGTACTATCCTAGCAACCGGTACGCCAGAAGATGTGGCGCAGCATCCTACATCCCATACCGCGC GCTTCTTAAAGCCGCTGCTGGAGCGGGATGCTAAGCTAGCCAAGCAGTCATAA
Upstream 100 bases:
>100_bases CATTGGGCGTGTCAGCAAGATCACAGAATCGACTAAACTCGGCCGCCGAACTGTGCGATACTTAGGCTCATTTTTTTTAA GCATAAGACTTGAGCGATAG
Downstream 100 bases:
>100_bases TATAAAGTGTCAGTAGTGCCTTGGTATCTCCAAGGCGCTGTAATTACACCCTATCGAGGTATAAAACCCTCTCAGGCAAG CCATTCGCCGTTATCAATCG
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 950; Mature: 950
Protein sequence:
>950_residues MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPTHGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKG EHVKLLEGLSAQGYIRARIDGEVCDLTDPPALDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASMDEG TTEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDPDRVITNPELSLAGGAIRGWDRRNFYYFQM LSSLADHYKFDVEVPFEQLSDKVRKIVLYGSGKDSIAFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAVREELAKF INTQACQSCGGSRLREEARNVFIGDLNLPKLTVWSIGEALEYFDKLEFSGQKAQIAEKVLKEVRDRLGFLVNVGLNYLSL SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNTVIVVEHDEDAIRIADHIIDI GPGAGVHGGEVICDGPIEKIVACDESVTGQYISGKRNIHISTPRTPYDPKQVIELYGARGNNLRNVDLTVPVGLFTCVTG VSGSGKSTLINDTFFRIAHKQLNGATVDEPAPYDRIVGMEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREIFAATQE SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACKGKRYNRETLEVRYKGKNIHEVLQMTVEDAREFF DAVPAIARKLQTLMDVGLSYVRLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKS HGNTIVVIEHNLDVIKTADWIIDLGPEGGGGGGTILATGTPEDVAQHPTSHTARFLKPLLERDAKLAKQS
Sequences:
>Translated_950_residues MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPTHGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKG EHVKLLEGLSAQGYIRARIDGEVCDLTDPPALDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASMDEG TTEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDPDRVITNPELSLAGGAIRGWDRRNFYYFQM LSSLADHYKFDVEVPFEQLSDKVRKIVLYGSGKDSIAFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAVREELAKF INTQACQSCGGSRLREEARNVFIGDLNLPKLTVWSIGEALEYFDKLEFSGQKAQIAEKVLKEVRDRLGFLVNVGLNYLSL SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNTVIVVEHDEDAIRIADHIIDI GPGAGVHGGEVICDGPIEKIVACDESVTGQYISGKRNIHISTPRTPYDPKQVIELYGARGNNLRNVDLTVPVGLFTCVTG VSGSGKSTLINDTFFRIAHKQLNGATVDEPAPYDRIVGMEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREIFAATQE SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACKGKRYNRETLEVRYKGKNIHEVLQMTVEDAREFF DAVPAIARKLQTLMDVGLSYVRLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKS HGNTIVVIEHNLDVIKTADWIIDLGPEGGGGGGTILATGTPEDVAQHPTSHTARFLKPLLERDAKLAKQS >Mature_950_residues MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS PAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRCPTHGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKG EHVKLLEGLSAQGYIRARIDGEVCDLTDPPALDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASMDEG TTEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDPDRVITNPELSLAGGAIRGWDRRNFYYFQM LSSLADHYKFDVEVPFEQLSDKVRKIVLYGSGKDSIAFKYINDRGDVVVRNHPFEGILNNMDRRYRETESNAVREELAKF INTQACQSCGGSRLREEARNVFIGDLNLPKLTVWSIGEALEYFDKLEFSGQKAQIAEKVLKEVRDRLGFLVNVGLNYLSL SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNTVIVVEHDEDAIRIADHIIDI GPGAGVHGGEVICDGPIEKIVACDESVTGQYISGKRNIHISTPRTPYDPKQVIELYGARGNNLRNVDLTVPVGLFTCVTG VSGSGKSTLINDTFFRIAHKQLNGATVDEPAPYDRIVGMEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREIFAATQE SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACKGKRYNRETLEVRYKGKNIHEVLQMTVEDAREFF DAVPAIARKLQTLMDVGLSYVRLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKS HGNTIVVIEHNLDVIKTADWIIDLGPEGGGGGGTILATGTPEDVAQHPTSHTARFLKPLLERDAKLAKQS
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=940, Percent_Identity=80.4255319148936, Blast_Score=1576, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 104993; Mature: 104993
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCCEEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC HHHHHHHHCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PTHGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKGEHVKLLEGLSAQGYIRARID CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEHHHHCCCCCCEEEEEEC GEVCDLTDPPALDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASMDEG CCEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC TTEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDPDRVITNPEL CCHHEEEECCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCC SLAGGAIRGWDRRNFYYFQMLSSLADHYKFDVEVPFEQLSDKVRKIVLYGSGKDSIAFKY EECCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCHHHHHHHHEEEEEEECCCCCEEEEE INDRGDVVVRNHPFEGILNNMDRRYRETESNAVREELAKFINTQACQSCGGSRLREEARN ECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC VFIGDLNLPKLTVWSIGEALEYFDKLEFSGQKAQIAEKVLKEVRDRLGFLVNVGLNYLSL EEEECCCCCEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCEEHCCCCHHHHH SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNT CCCCHHCCCCCHHHHHHHHHHCCCCEEHEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCE VIVVEHDEDAIRIADHIIDIGPGAGVHGGEVICDGPIEKIVACDESVTGQYISGKRNIHI EEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCEECCCCEEEE STPRTPYDPKQVIELYGARGNNLRNVDLTVPVGLFTCVTGVSGSGKSTLINDTFFRIAHK CCCCCCCCHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHCCCCCCCCCEEHHHHHHHHHH QLNGATVDEPAPYDRIVGMEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREIFAATQE HCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHH SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACKGKRYNRETLEVRY HHHCCEEEEEEEEEECCCEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE KGKNIHEVLQMTVEDAREFFDAVPAIARKLQTLMDVGLSYVRLGQSATTLSGGEAQRVKL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHH AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIKTADW HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCE IIDLGPEGGGGGGTILATGTPEDVAQHPTSHTARFLKPLLERDAKLAKQS EEEECCCCCCCCCEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCCEEECCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC HHHHHHHHCCCCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PTHGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKGEHVKLLEGLSAQGYIRARID CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEHHHHCCCCCCEEEEEEC GEVCDLTDPPALDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASMDEG CCEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC TTEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDPDRVITNPEL CCHHEEEECCCCCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCC SLAGGAIRGWDRRNFYYFQMLSSLADHYKFDVEVPFEQLSDKVRKIVLYGSGKDSIAFKY EECCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCHHHHHHHHEEEEEEECCCCCEEEEE INDRGDVVVRNHPFEGILNNMDRRYRETESNAVREELAKFINTQACQSCGGSRLREEARN ECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCC VFIGDLNLPKLTVWSIGEALEYFDKLEFSGQKAQIAEKVLKEVRDRLGFLVNVGLNYLSL EEEECCCCCEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCEEHCCCCHHHHH SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNT CCCCHHCCCCCHHHHHHHHHHCCCCEEHEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCE VIVVEHDEDAIRIADHIIDIGPGAGVHGGEVICDGPIEKIVACDESVTGQYISGKRNIHI EEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCEECCCCEEEE STPRTPYDPKQVIELYGARGNNLRNVDLTVPVGLFTCVTGVSGSGKSTLINDTFFRIAHK CCCCCCCCHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHCCCCCCCCCEEHHHHHHHHHH QLNGATVDEPAPYDRIVGMEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREIFAATQE HCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHH SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACKGKRYNRETLEVRY HHHCCEEEEEEEEEECCCEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE KGKNIHEVLQMTVEDAREFFDAVPAIARKLQTLMDVGLSYVRLGQSATTLSGGEAQRVKL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHHH AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIKTADW HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCE IIDLGPEGGGGGGTILATGTPEDVAQHPTSHTARFLKPLLERDAKLAKQS EEEECCCCCCCCCEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]