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The map label for this gene is 117921981

Identifier: 117921981

GI number: 117921981

Start: 4247053

End: 4247631

Strand: Direct

Name: 117921981

Synonym: Shewana3_3544

Alternate gene names: NA

Gene position: 4247053-4247631 (Clockwise)

Preceding gene: 117921980

Following gene: 117921983

Centisome position: 85.42

GC content: 46.63

Gene sequence:

>579_bases
ATGGAAAGAGGCATTTTAGTTCGTTGGAACGATGAAAAAGGATTCGGGTTTATTCAACCGGAACAACAGGGTAAAGACGT
CTTTATCCATATTACCGTGCTTAAGCACATGGCGAGAAAACCTCAGGTTGGCGATAGCATTCTGTATCGCACCGAAATAC
AAAATGATGGCAAAGTGAAAGCCATCAAGGCCTCTATCGAAGGGGTCGCCGTCTTAGCTAACACCAGTAAAAGCCCACGC
CGCAATGCGAATCCCCCGAGTCGCTCCCTATCAAATACCCTGCTGCCACTGTTATTAATCTTTGGCATCGGAATATTTGG
TTTTAAAAAATATACCGAATATGAGATAGCTCAGGCCCCTAATAACACAGAGATAGAAACAACGCCCCTGTATGAGCCTC
AAACTCAATTTCAGTCAGCACCTCAGGCTCAGTTTCGCTGCGAGGCAGGTAAAACCCATTGCAGCCATATGCGCTCCTGC
GCCGAAGCCACGTTTTACATCAATAACTGTCCGAATACCCAAATGGACGGTGATGGCGATGGGATCCCCTGTGAGCGACA
ATGGTGTAATGGCTATTAA

Upstream 100 bases:

>100_bases
AAGCTGGTGCAATAATCTCTGTCACATCCCAAATATCACCATTGACCTTAAGGTCAATCCCACATATAAAGAACGTAAAT
TAAGCACTTAGAGCAAGCTC

Downstream 100 bases:

>100_bases
CGAAATAAAAGCCCCTGTTGGTTAACAGGGGCTTTTACCTCGGATGAAGTGACAGCATCAGGTACAGTTAATACCGTCAG
CTGCGCGCTTCATCCTAAAA

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: Cold Shock Domain-Contain Protein; Cold-Shock Protein; Cold-Shock Domain-Contain Protein; Cold Shock Domain-Containing Protein CspD; Cold Shock Family Protein; Cold Shock/Excaliber Domain-Containing Protein CspD

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MERGILVRWNDEKGFGFIQPEQQGKDVFIHITVLKHMARKPQVGDSILYRTEIQNDGKVKAIKASIEGVAVLANTSKSPR
RNANPPSRSLSNTLLPLLLIFGIGIFGFKKYTEYEIAQAPNNTEIETTPLYEPQTQFQSAPQAQFRCEAGKTHCSHMRSC
AEATFYINNCPNTQMDGDGDGIPCERQWCNGY

Sequences:

>Translated_192_residues
MERGILVRWNDEKGFGFIQPEQQGKDVFIHITVLKHMARKPQVGDSILYRTEIQNDGKVKAIKASIEGVAVLANTSKSPR
RNANPPSRSLSNTLLPLLLIFGIGIFGFKKYTEYEIAQAPNNTEIETTPLYEPQTQFQSAPQAQFRCEAGKTHCSHMRSC
AEATFYINNCPNTQMDGDGDGIPCERQWCNGY
>Mature_192_residues
MERGILVRWNDEKGFGFIQPEQQGKDVFIHITVLKHMARKPQVGDSILYRTEIQNDGKVKAIKASIEGVAVLANTSKSPR
RNANPPSRSLSNTLLPLLLIFGIGIFGFKKYTEYEIAQAPNNTEIETTPLYEPQTQFQSAPQAQFRCEAGKTHCSHMRSC
AEATFYINNCPNTQMDGDGDGIPCERQWCNGY

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21543; Mature: 21543

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERGILVRWNDEKGFGFIQPEQQGKDVFIHITVLKHMARKPQVGDSILYRTEIQNDGKVK
CCCCEEEEECCCCCCEECCCCCCCCEEEEEEHHHHHHHCCCCCCCCEEEEEECCCCCCEE
AIKASIEGVAVLANTSKSPRRNANPPSRSLSNTLLPLLLIFGIGIFGFKKYTEYEIAQAP
EEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
NNTEIETTPLYEPQTQFQSAPQAQFRCEAGKTHCSHMRSCAEATFYINNCPNTQMDGDGD
CCCCCEECCCCCCHHHHCCCCCHHEEECCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCC
GIPCERQWCNGY
CCCCCCCCCCCC
>Mature Secondary Structure
MERGILVRWNDEKGFGFIQPEQQGKDVFIHITVLKHMARKPQVGDSILYRTEIQNDGKVK
CCCCEEEEECCCCCCEECCCCCCCCEEEEEEHHHHHHHCCCCCCCCEEEEEECCCCCCEE
AIKASIEGVAVLANTSKSPRRNANPPSRSLSNTLLPLLLIFGIGIFGFKKYTEYEIAQAP
EEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
NNTEIETTPLYEPQTQFQSAPQAQFRCEAGKTHCSHMRSCAEATFYINNCPNTQMDGDGD
CCCCCEECCCCCCHHHHCCCCCHHEEECCCCHHHHHHHHHHHHEEEEECCCCCCCCCCCC
GIPCERQWCNGY
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA