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The map label for this gene is yciR [C]

Identifier: 117921980

GI number: 117921980

Start: 4244988

End: 4246967

Strand: Direct

Name: yciR [C]

Synonym: Shewana3_3543

Alternate gene names: 117921980

Gene position: 4244988-4246967 (Clockwise)

Preceding gene: 117921979

Following gene: 117921981

Centisome position: 85.37

GC content: 47.07

Gene sequence:

>1980_bases
ATGAGTGGCAAGTTAAGGCAACTCATAGGTACATTGCAGCAACAGTCGCGCTCTACCGTCGCTAAGGTACTGTTGATTAT
TGGCATGTTTATCGGGATCTGCATCACCCTCGTCTTCCTCGTCTATATTCAGGGCAATATTTTCGATGGTGTGCGCACCT
ATGTCAGGGGCGAAGGACTCTGGGCCAAAGCGCAAAAAGATGCCACGTTTTACCTTATCCACTATTCCTACAACAAAAAC
GAAGTCGACTATCAACGTTATCTCGCGGCAACGGCTGTGATGCTAGGCGACAGGCAAGCTCGCGAGGCCCTACTCGCCTC
GCCAATCGATGAGTTAAAGGCCAAAGATGGCTTTATCCAAGGTTTGAATGATGAAAGGGATACTGAATCTTTAATTTGGT
TTTTTCGGCATTTTAACCGCACTCACTATATGCAACGGGCAGTTGAGATTTGGACCCTCGCCGACGAAAGATTTAACACT
ATGATGTTATTGGCAGACTCGATGCACGATGAGGTTTCCCAATTTGGAGGCAGTCCACCAGACCTTAGCCAATATCGGCA
GCAGCTTATCCAGTTAAATGAAGAACTGCTCAGTTTAGAAATTGAATTCTCCTTAGTGCTTAGCGAAGGCGCTCGCTGGG
TAAAACGCATTACCTGGTTAATCAGCTTAGGAGTCGTCTTACTCTTTATCAGCATAGGTATTTTGGTCAGCAGGCAGATC
ATCCGCAACATTGCAAAATCTGAAAAACAACTATTAATCAGCGAGTCACGATTTAGCAGCCTTAAAAATTCCGACACCAT
AGGCATTATTTCATGGCAGCTCGATGGCACCATCCACGATGCCAATGATCATTTTCTCCATATGTTAGGTTTTGACCGTG
AAGACTTAGCCGCGGGTCTGATCAACTGGCGCTCACTCACGCCACCAGAGTTTGAGGCGAGGGATAACATCGCAATCGCC
GAGCTTATCGAAATTGGCCACTGTCATCAGTATGAAAAACAGCTTATTAGCAAAACGGGTGCCCATGTGCCCGTCATGCT
TGGTGCAAGCTTTTTAAATAGCAGCACCCAGGAAGGTGTCGCCTATTTTATGGATTTGACCAGCAGTAAGCAGGCCGAAG
ATAAACTGAGACTGGCCGCAACCGTGTTTAATGCCAGCACGGACGGCATCATAATCACAGACCCGCTGATGAGTATTATC
TCTATCAATCAGGCATTTACCGATATAACCGGATTGACTGAGCAGAGTTTACATCAAGATGCCTCACGCTTTATTAATAC
GGGGCATCCGAACGAAGATGCCTATCAGGCCATGTGCAATCTGCTACAACAGGGGGAGCAATGGCAGGGTGAACTTATCA
AGGAAACCGCATCGGGTTATCTGCCCTTAAGTGTGCGGATAAACACGGTAAGGAATGAGCACAACCGACTGACTCACTTC
GTGATTGTAATAACCGATATTTCGGAGCGCAAAGCCGAAGAAGAACATTTACGCCACATTGCCCACCACGATGCCCTCAC
CAATCTTCCCAATCGGGTGTTATTCCATACTAAATTGGAGCAGGCGATAGTGCATGCGCAGCGATCCGATGGGATCTTTG
CCATTCTGTTTCTCGACTTAGATAACTTCAAACCAGTCAACGATGAGTTTGGCCACGATGTCGGCGATAAGTTATTGCAG
GAAGTGGCGAAACGGCTTACCAGTAGCATTCGGCAAATCGATACCATCACTCGTCTCGGCGGCGATGAATTTGTGATTCT
GTTGGAGCACTTACCCAATGAGGAAAGTGTGCCCATTTTGATCCGCAAAATTACCCAAGCACTCACGGCACCTTACATTA
TCCATAAACATAAGCTGCACATCGGAGTGAGCATAGGCTCGGCCATTTATCCCTGCCACGGCATCGATGCCAAGAGCCTG
ATCAACTATGCGGATCAAGCCATGTATGTGGTTAAAAAAGCCAACAAGCTGGTGCAATAA

Upstream 100 bases:

>100_bases
CCAAGGAACAGATGAAAAACCAACAGGTTAATAACCATCTTCAACTTAACATGCGCCTATCTTTTCCTCGCCAACCTAGC
CGTGGCGCTAGGAGTTCTGG

Downstream 100 bases:

>100_bases
TCTCTGTCACATCCCAAATATCACCATTGACCTTAAGGTCAATCCCACATATAAAGAACGTAAATTAAGCACTTAGAGCA
AGCTCATGGAAAGAGGCATT

Product: diguanylate cyclase with PAS/PAC sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 659; Mature: 658

Protein sequence:

>659_residues
MSGKLRQLIGTLQQQSRSTVAKVLLIIGMFIGICITLVFLVYIQGNIFDGVRTYVRGEGLWAKAQKDATFYLIHYSYNKN
EVDYQRYLAATAVMLGDRQAREALLASPIDELKAKDGFIQGLNDERDTESLIWFFRHFNRTHYMQRAVEIWTLADERFNT
MMLLADSMHDEVSQFGGSPPDLSQYRQQLIQLNEELLSLEIEFSLVLSEGARWVKRITWLISLGVVLLFISIGILVSRQI
IRNIAKSEKQLLISESRFSSLKNSDTIGIISWQLDGTIHDANDHFLHMLGFDREDLAAGLINWRSLTPPEFEARDNIAIA
ELIEIGHCHQYEKQLISKTGAHVPVMLGASFLNSSTQEGVAYFMDLTSSKQAEDKLRLAATVFNASTDGIIITDPLMSII
SINQAFTDITGLTEQSLHQDASRFINTGHPNEDAYQAMCNLLQQGEQWQGELIKETASGYLPLSVRINTVRNEHNRLTHF
VIVITDISERKAEEEHLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDGIFAILFLDLDNFKPVNDEFGHDVGDKLLQ
EVAKRLTSSIRQIDTITRLGGDEFVILLEHLPNEESVPILIRKITQALTAPYIIHKHKLHIGVSIGSAIYPCHGIDAKSL
INYADQAMYVVKKANKLVQ

Sequences:

>Translated_659_residues
MSGKLRQLIGTLQQQSRSTVAKVLLIIGMFIGICITLVFLVYIQGNIFDGVRTYVRGEGLWAKAQKDATFYLIHYSYNKN
EVDYQRYLAATAVMLGDRQAREALLASPIDELKAKDGFIQGLNDERDTESLIWFFRHFNRTHYMQRAVEIWTLADERFNT
MMLLADSMHDEVSQFGGSPPDLSQYRQQLIQLNEELLSLEIEFSLVLSEGARWVKRITWLISLGVVLLFISIGILVSRQI
IRNIAKSEKQLLISESRFSSLKNSDTIGIISWQLDGTIHDANDHFLHMLGFDREDLAAGLINWRSLTPPEFEARDNIAIA
ELIEIGHCHQYEKQLISKTGAHVPVMLGASFLNSSTQEGVAYFMDLTSSKQAEDKLRLAATVFNASTDGIIITDPLMSII
SINQAFTDITGLTEQSLHQDASRFINTGHPNEDAYQAMCNLLQQGEQWQGELIKETASGYLPLSVRINTVRNEHNRLTHF
VIVITDISERKAEEEHLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDGIFAILFLDLDNFKPVNDEFGHDVGDKLLQ
EVAKRLTSSIRQIDTITRLGGDEFVILLEHLPNEESVPILIRKITQALTAPYIIHKHKLHIGVSIGSAIYPCHGIDAKSL
INYADQAMYVVKKANKLVQ
>Mature_658_residues
SGKLRQLIGTLQQQSRSTVAKVLLIIGMFIGICITLVFLVYIQGNIFDGVRTYVRGEGLWAKAQKDATFYLIHYSYNKNE
VDYQRYLAATAVMLGDRQAREALLASPIDELKAKDGFIQGLNDERDTESLIWFFRHFNRTHYMQRAVEIWTLADERFNTM
MLLADSMHDEVSQFGGSPPDLSQYRQQLIQLNEELLSLEIEFSLVLSEGARWVKRITWLISLGVVLLFISIGILVSRQII
RNIAKSEKQLLISESRFSSLKNSDTIGIISWQLDGTIHDANDHFLHMLGFDREDLAAGLINWRSLTPPEFEARDNIAIAE
LIEIGHCHQYEKQLISKTGAHVPVMLGASFLNSSTQEGVAYFMDLTSSKQAEDKLRLAATVFNASTDGIIITDPLMSIIS
INQAFTDITGLTEQSLHQDASRFINTGHPNEDAYQAMCNLLQQGEQWQGELIKETASGYLPLSVRINTVRNEHNRLTHFV
IVITDISERKAEEEHLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDGIFAILFLDLDNFKPVNDEFGHDVGDKLLQE
VAKRLTSSIRQIDTITRLGGDEFVILLEHLPNEESVPILIRKITQALTAPYIIHKHKLHIGVSIGSAIYPCHGIDAKSLI
NYADQAMYVVKKANKLVQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=283, Percent_Identity=29.6819787985866, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI1788381, Length=177, Percent_Identity=35.5932203389831, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=32.7380952380952, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1788956, Length=172, Percent_Identity=36.6279069767442, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=32.1212121212121, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI87081881, Length=113, Percent_Identity=39.8230088495575, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=27.906976744186, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081977, Length=233, Percent_Identity=30.9012875536481, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=31.4102564102564, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=31.6455696202532, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=31.6129032258064, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788085, Length=151, Percent_Identity=29.1390728476821, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 74522; Mature: 74391

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKLRQLIGTLQQQSRSTVAKVLLIIGMFIGICITLVFLVYIQGNIFDGVRTYVRGEGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
WAKAQKDATFYLIHYSYNKNEVDYQRYLAATAVMLGDRQAREALLASPIDELKAKDGFIQ
EEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCHHC
GLNDERDTESLIWFFRHFNRTHYMQRAVEIWTLADERFNTMMLLADSMHDEVSQFGGSPP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
DLSQYRQQLIQLNEELLSLEIEFSLVLSEGARWVKRITWLISLGVVLLFISIGILVSRQI
CHHHHHHHHHHHHHHHHEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNIAKSEKQLLISESRFSSLKNSDTIGIISWQLDGTIHDANDHFLHMLGFDREDLAAGL
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEECCCCCEEEECCCCHHHHHHHH
INWRSLTPPEFEARDNIAIAELIEIGHCHQYEKQLISKTGAHVPVMLGASFLNSSTQEGV
HCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHH
AYFMDLTSSKQAEDKLRLAATVFNASTDGIIITDPLMSIISINQAFTDITGLTEQSLHQD
HHHHHCCCCCCHHHHHHHHHHEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHH
ASRFINTGHPNEDAYQAMCNLLQQGEQWQGELIKETASGYLPLSVRINTVRNEHNRLTHF
HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEEEEHHCCCCCEEEE
VIVITDISERKAEEEHLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDGIFAILFLDL
EEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
DNFKPVNDEFGHDVGDKLLQEVAKRLTSSIRQIDTITRLGGDEFVILLEHLPNEESVPIL
CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHH
IRKITQALTAPYIIHKHKLHIGVSIGSAIYPCHGIDAKSLINYADQAMYVVKKANKLVQ
HHHHHHHHCCCHHEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SGKLRQLIGTLQQQSRSTVAKVLLIIGMFIGICITLVFLVYIQGNIFDGVRTYVRGEGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
WAKAQKDATFYLIHYSYNKNEVDYQRYLAATAVMLGDRQAREALLASPIDELKAKDGFIQ
EEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCHHC
GLNDERDTESLIWFFRHFNRTHYMQRAVEIWTLADERFNTMMLLADSMHDEVSQFGGSPP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
DLSQYRQQLIQLNEELLSLEIEFSLVLSEGARWVKRITWLISLGVVLLFISIGILVSRQI
CHHHHHHHHHHHHHHHHEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRNIAKSEKQLLISESRFSSLKNSDTIGIISWQLDGTIHDANDHFLHMLGFDREDLAAGL
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEECCCCCEEEECCCCHHHHHHHH
INWRSLTPPEFEARDNIAIAELIEIGHCHQYEKQLISKTGAHVPVMLGASFLNSSTQEGV
HCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHH
AYFMDLTSSKQAEDKLRLAATVFNASTDGIIITDPLMSIISINQAFTDITGLTEQSLHQD
HHHHHCCCCCCHHHHHHHHHHEECCCCCCEEEEHHHHHHHHHHHHHHHHHCCHHHHHHHH
ASRFINTGHPNEDAYQAMCNLLQQGEQWQGELIKETASGYLPLSVRINTVRNEHNRLTHF
HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEEEEHHCCCCCEEEE
VIVITDISERKAEEEHLRHIAHHDALTNLPNRVLFHTKLEQAIVHAQRSDGIFAILFLDL
EEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
DNFKPVNDEFGHDVGDKLLQEVAKRLTSSIRQIDTITRLGGDEFVILLEHLPNEESVPIL
CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHH
IRKITQALTAPYIIHKHKLHIGVSIGSAIYPCHGIDAKSLINYADQAMYVVKKANKLVQ
HHHHHHHHCCCHHEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]