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The map label for this gene is ycaC [C]

Identifier: 117921970

GI number: 117921970

Start: 4233100

End: 4233642

Strand: Direct

Name: ycaC [C]

Synonym: Shewana3_3533

Alternate gene names: 117921970

Gene position: 4233100-4233642 (Clockwise)

Preceding gene: 117921964

Following gene: 117921979

Centisome position: 85.14

GC content: 48.07

Gene sequence:

>543_bases
ATGTTAAAACCTGAAGAATGTGTACTCGTTATCGTCGATGTGCAGGGAAAGCTCGCTCAGATCATGGATAACTCAGCCAA
GCTTCATCAGCAGTTGAGTACGCTTATCCAAGGCGCACAACTGTTTGAAATCCCCATCCTCTGGCTTGAGCAATTACCCG
CCAAGCTTGGCTCGACCACAGAAGAGCTAAAAACCTTGCTCGAAAGAACTGGCTCGCCCATTGCCAAGCAACATTTTAGC
GGTTGGTATTGTGATGAATTTGCCAATGCATTAACCCAAACTCGACGCAAACAGGTGCTGCTGGCGGGGATAGAAACCCA
TGTTTGCGTGTACCAAACCTGCCGCGATCTACTCGACCAGCACTACTCGGTGCACCTTGTCGCCGATGCCGTTTCTTCCC
GCAGCGTTGACAATAAACAGCTGGGCATCCAGATGATGACAGCCAAGGGAGCCACTCTTACCAATGTGGAGTCACTGTTG
TTTGAACTGCAACATGAAGCTCAGGGCGATATATTTAAGGCACTGATTAAATTGATTAAATAA

Upstream 100 bases:

>100_bases
TTGGTGAGGCTGCCCAATTAGGGTTTACTGACAGTGCAGAAAACAAGCAGAGCAATCGCTAAACGATGCCTTTATTCCAC
CCGCGCAGAAGGAACGCCCG

Downstream 100 bases:

>100_bases
GGTGAGAAGAGAGTTTGTTCAAGCTCTCTTTCGTAATCAAAACGCGGCAACACAAACGGCATAGTTGGCACTATTAGCAT
AGCTGCGAGAACTATAGCCG

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: Isochorismatase Family Protein; Isochorismatase Superfamily Hydrolase; Isochorismatase Hydrolase Family Protein; Nicotinamidase-Like Amidase; Amidase; Isochorismatase Family Hydrolase; Isochorismatase Domain-Containing; Hydrolase; Amidohydrolase; Hydrolase Isochorismatase; Amidase Related Nicotinamidase; YcaC Like Amidohydrolase; Isochorismatase Family; Nicotinamidase; YcaC-Related Amidohydrolase; Isochorismatase Domain-Containing A; Isochorismatase Hydrolase Family; Hydrolase Isochorismatase Family; Nicotinamidase-Related Amidase

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MLKPEECVLVIVDVQGKLAQIMDNSAKLHQQLSTLIQGAQLFEIPILWLEQLPAKLGSTTEELKTLLERTGSPIAKQHFS
GWYCDEFANALTQTRRKQVLLAGIETHVCVYQTCRDLLDQHYSVHLVADAVSSRSVDNKQLGIQMMTAKGATLTNVESLL
FELQHEAQGDIFKALIKLIK

Sequences:

>Translated_180_residues
MLKPEECVLVIVDVQGKLAQIMDNSAKLHQQLSTLIQGAQLFEIPILWLEQLPAKLGSTTEELKTLLERTGSPIAKQHFS
GWYCDEFANALTQTRRKQVLLAGIETHVCVYQTCRDLLDQHYSVHLVADAVSSRSVDNKQLGIQMMTAKGATLTNVESLL
FELQHEAQGDIFKALIKLIK
>Mature_180_residues
MLKPEECVLVIVDVQGKLAQIMDNSAKLHQQLSTLIQGAQLFEIPILWLEQLPAKLGSTTEELKTLLERTGSPIAKQHFS
GWYCDEFANALTQTRRKQVLLAGIETHVCVYQTCRDLLDQHYSVHLVADAVSSRSVDNKQLGIQMMTAKGATLTNVESLL
FELQHEAQGDIFKALIKLIK

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI209969695, Length=182, Percent_Identity=34.6153846153846, Blast_Score=87, Evalue=7e-18,
Organism=Homo sapiens, GI103471987, Length=180, Percent_Identity=31.6666666666667, Blast_Score=85, Evalue=3e-17,
Organism=Homo sapiens, GI13376007, Length=198, Percent_Identity=31.8181818181818, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17540156, Length=178, Percent_Identity=34.2696629213483, Blast_Score=88, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21357489, Length=182, Percent_Identity=30.2197802197802, Blast_Score=87, Evalue=7e-18,
Organism=Drosophila melanogaster, GI19922924, Length=180, Percent_Identity=27.7777777777778, Blast_Score=83, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20143; Mature: 20143

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKPEECVLVIVDVQGKLAQIMDNSAKLHQQLSTLIQGAQLFEIPILWLEQLPAKLGSTT
CCCCCCEEEEEEECCHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCH
EELKTLLERTGSPIAKQHFSGWYCDEFANALTQTRRKQVLLAGIETHVCVYQTCRDLLDQ
HHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HYSVHLVADAVSSRSVDNKQLGIQMMTAKGATLTNVESLLFELQHEAQGDIFKALIKLIK
CCEEHHHHHHHHHCCCCCHHHCEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHC
>Mature Secondary Structure
MLKPEECVLVIVDVQGKLAQIMDNSAKLHQQLSTLIQGAQLFEIPILWLEQLPAKLGSTT
CCCCCCEEEEEEECCHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCH
EELKTLLERTGSPIAKQHFSGWYCDEFANALTQTRRKQVLLAGIETHVCVYQTCRDLLDQ
HHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HYSVHLVADAVSSRSVDNKQLGIQMMTAKGATLTNVESLLFELQHEAQGDIFKALIKLIK
CCEEHHHHHHHHHCCCCCHHHCEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA