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The map label for this gene is cirA [C]

Identifier: 117921820

GI number: 117921820

Start: 4053213

End: 4055489

Strand: Direct

Name: cirA [C]

Synonym: Shewana3_3383

Alternate gene names: 117921820

Gene position: 4053213-4055489 (Clockwise)

Preceding gene: 117921819

Following gene: 117921823

Centisome position: 81.52

GC content: 53.97

Gene sequence:

>2277_bases
ATGAAACTTGCACTATCTTCAATAGCGCTTGCGGTCGCGAGCGTATGTTCATCGGCTATGGCCGCAGAGCTTCAAGGCCA
AGTCACTGATCAACAAGGTAACGCGCTCGCCAATGCCCGCGTCAGTGTTGACGGCGGTAACAGCACGACCACGAATGCCC
AAGGCCAGTATCAACTCAAGATTGCCGATAATAGTCACCTGCACCTACACGTGAGTCATGCGAATTTTAAACATAGCGAT
CAAGAGATTAGCTCAAAGACAGGTTTGCTCATTCAAGATGTGACGCTGAGCCAAACCCCGATGGAAAATATTGTGGTAAC
CGCATCGCCCCTCGCCCGCTCGGCCCTCGAAAGCACTACGCCCATCAGCGTATTGACCGAGGATCAACTCAAACTCAACA
CCGAACCCACCTTGGGCGACACCTTAGAAAAACTCCCCGGCGTACAGGCCTCTCACTTTGGTGCGGGCGCCAGTCGGCCG
ATTATCCGCGGCATGGGCGGCCCCAGAGTACAAGTGCTTGAAAATGGCCTGTCGGTTGGCGATGCCTCCACTGTATCGGC
GGACCATGCCGTGACCTCCGAGGCAGCCTCGGCGCAGCAGATTGAAATTCTTCGCGGTCCAGGCACCCTACTCTATGGCA
ATGGCGCCATCGGCGGTGTCGTCAATGTGGTCGATAGCCGCTACAGCGAAACCCCAATCGATGAAGTGACAGGGCACTTT
GGCGCTCGCTACGACAGTGCCAATCATGGCCAAACCTACAATGGCGAACTCAACGGCGGTAATGGCCAGTTCAACTGGCA
TCTGGATGGCACCCACAGAAAAACCGAGGATGTCGACATTCCCGGTAATGCCATTGCCGATATGCCGACCACCCACGGCA
CCTTAGCCAATAGCCAACTCAAACTCGATGATTACGCCGCAGGCGTTGGCTATACAGGGGATTCGGGTTTTGTTAGCGTC
TCCGGCGCGCGCACCGAATCCAACTACGGCATCCCCAGTCGTGGGGAAGCCGATGCACCCAATATCAGCATCGACTTACA
AAAAACCGCTTGGCAGTTGCATAGCGGGCTACTCGACCCCTTTGCTGGTTTTAGTAAGTTAAAATTCGACGCAGCCTATA
GCGATTATCAACACGCCGAGGAAGAAGATGGCGTTGCTGGCACCACCTTTTTTAACAAGCAGAGCGAAGCACGTTTAAGC
CTGAACAATCATCCTTGGGGCGAATGGCAAGGCACCCTAGGGCTGCATGCGGTGCACCGTGACTTTGCGGTGGAAGGCGA
CGAAGCCCTGACCCCCGACAGTAAAACGGACACTCTCGCTGCTTTTATCGTGCAAGAACGTAAGCTTGGGGATTTTCGCT
TTGAACTCGGCGGTCGCCTAGAGCATTACCGCCTCACGCCCGATAGCATGCAGCTCGACACGCTTAATGGCGAACAAGAG
TATCAACCTAATGATTTAACTGATAATAATGTGACGCTGTCTGCGGGCGTGGTGTGGGACTTTAGTCCATCATACAACCT
AGGGCTGTCACTCACCCGCGCCGAACGCTCGGCCACCGCCGAAGAGCTTTACAGCTACGGGCCACACGATGCCACTCAAA
GCTTTGAGCTAGGGTCGCAATTTAGCCTAGAGAATGGCCAAATCGTCGCCAACAGCGGCAGTAACGATAAGGAAATCGCC
AACAATATCGACCTCACGCTGCGCAAGCTGGACGGCGCATGGACTGGTTCACTCAGCCTCGCCTATAACCGAGTCAACAA
CTTCTACTATGAGCGCAATACTGGACTGGTTGCCTCTGATCTGGTCAACAGCGATGAAGAAGGCGATATGCCGGTTTATC
AATATACTCAAGGCGATGCGGATCTTTATTCCATCGAGGCGCAGGCAACGATTCCATTTAATGATCTCTGGTCACTCGGG
CTCTTTAGCGACTACACCCGCGGCAAACTCGTCGATGGCGGTAACTTACCGCAAATATCGCCGATGCGTGTCGGCTCGAC
ATTAAACTTCGATCTGCAGCAGTGGCACGCAGAGTTAGGCGCCATAGGCTATGCCCGCCAAACCGACACCGCCGACAATG
AGACTGAAACCGCAGGCTATGCCCTAGTGAATGCGGCCGCCACTTATCGCTGGTATACCTCAAGCGGCGATATTTTGGTT
TATCTCAAAGGCACCAACCTGCTTAATCAGGAGGCCCGTCCCCATACTTCCCTACTCAAGGATTATGCGCCGTTAATGGG
GCGAAACCTGATGCTGGGAGTCACCTATAACTTCTAA

Upstream 100 bases:

>100_bases
AGCCCACATCCGCCATGTTGATGCGCGCGCCCCTCCCTTTTAGAAAGCAAATTCAAAAACTTAAAAATTAATTTTTTGCT
TATCTACAAGGAAAGGCACA

Downstream 100 bases:

>100_bases
CCCTAGGCCATAAACCAAAAAGCGAAGCCATTTGGCTTCGCTTTTTATTCACTTAACTGCGGGTTATTTCATTAACCACG
CGCGGTAGGACTTACCTTTA

Product: TonB-dependent receptor, plug

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 758; Mature: 758

Protein sequence:

>758_residues
MKLALSSIALAVASVCSSAMAAELQGQVTDQQGNALANARVSVDGGNSTTTNAQGQYQLKIADNSHLHLHVSHANFKHSD
QEISSKTGLLIQDVTLSQTPMENIVVTASPLARSALESTTPISVLTEDQLKLNTEPTLGDTLEKLPGVQASHFGAGASRP
IIRGMGGPRVQVLENGLSVGDASTVSADHAVTSEAASAQQIEILRGPGTLLYGNGAIGGVVNVVDSRYSETPIDEVTGHF
GARYDSANHGQTYNGELNGGNGQFNWHLDGTHRKTEDVDIPGNAIADMPTTHGTLANSQLKLDDYAAGVGYTGDSGFVSV
SGARTESNYGIPSRGEADAPNISIDLQKTAWQLHSGLLDPFAGFSKLKFDAAYSDYQHAEEEDGVAGTTFFNKQSEARLS
LNNHPWGEWQGTLGLHAVHRDFAVEGDEALTPDSKTDTLAAFIVQERKLGDFRFELGGRLEHYRLTPDSMQLDTLNGEQE
YQPNDLTDNNVTLSAGVVWDFSPSYNLGLSLTRAERSATAEELYSYGPHDATQSFELGSQFSLENGQIVANSGSNDKEIA
NNIDLTLRKLDGAWTGSLSLAYNRVNNFYYERNTGLVASDLVNSDEEGDMPVYQYTQGDADLYSIEAQATIPFNDLWSLG
LFSDYTRGKLVDGGNLPQISPMRVGSTLNFDLQQWHAELGAIGYARQTDTADNETETAGYALVNAAATYRWYTSSGDILV
YLKGTNLLNQEARPHTSLLKDYAPLMGRNLMLGVTYNF

Sequences:

>Translated_758_residues
MKLALSSIALAVASVCSSAMAAELQGQVTDQQGNALANARVSVDGGNSTTTNAQGQYQLKIADNSHLHLHVSHANFKHSD
QEISSKTGLLIQDVTLSQTPMENIVVTASPLARSALESTTPISVLTEDQLKLNTEPTLGDTLEKLPGVQASHFGAGASRP
IIRGMGGPRVQVLENGLSVGDASTVSADHAVTSEAASAQQIEILRGPGTLLYGNGAIGGVVNVVDSRYSETPIDEVTGHF
GARYDSANHGQTYNGELNGGNGQFNWHLDGTHRKTEDVDIPGNAIADMPTTHGTLANSQLKLDDYAAGVGYTGDSGFVSV
SGARTESNYGIPSRGEADAPNISIDLQKTAWQLHSGLLDPFAGFSKLKFDAAYSDYQHAEEEDGVAGTTFFNKQSEARLS
LNNHPWGEWQGTLGLHAVHRDFAVEGDEALTPDSKTDTLAAFIVQERKLGDFRFELGGRLEHYRLTPDSMQLDTLNGEQE
YQPNDLTDNNVTLSAGVVWDFSPSYNLGLSLTRAERSATAEELYSYGPHDATQSFELGSQFSLENGQIVANSGSNDKEIA
NNIDLTLRKLDGAWTGSLSLAYNRVNNFYYERNTGLVASDLVNSDEEGDMPVYQYTQGDADLYSIEAQATIPFNDLWSLG
LFSDYTRGKLVDGGNLPQISPMRVGSTLNFDLQQWHAELGAIGYARQTDTADNETETAGYALVNAAATYRWYTSSGDILV
YLKGTNLLNQEARPHTSLLKDYAPLMGRNLMLGVTYNF
>Mature_758_residues
MKLALSSIALAVASVCSSAMAAELQGQVTDQQGNALANARVSVDGGNSTTTNAQGQYQLKIADNSHLHLHVSHANFKHSD
QEISSKTGLLIQDVTLSQTPMENIVVTASPLARSALESTTPISVLTEDQLKLNTEPTLGDTLEKLPGVQASHFGAGASRP
IIRGMGGPRVQVLENGLSVGDASTVSADHAVTSEAASAQQIEILRGPGTLLYGNGAIGGVVNVVDSRYSETPIDEVTGHF
GARYDSANHGQTYNGELNGGNGQFNWHLDGTHRKTEDVDIPGNAIADMPTTHGTLANSQLKLDDYAAGVGYTGDSGFVSV
SGARTESNYGIPSRGEADAPNISIDLQKTAWQLHSGLLDPFAGFSKLKFDAAYSDYQHAEEEDGVAGTTFFNKQSEARLS
LNNHPWGEWQGTLGLHAVHRDFAVEGDEALTPDSKTDTLAAFIVQERKLGDFRFELGGRLEHYRLTPDSMQLDTLNGEQE
YQPNDLTDNNVTLSAGVVWDFSPSYNLGLSLTRAERSATAEELYSYGPHDATQSFELGSQFSLENGQIVANSGSNDKEIA
NNIDLTLRKLDGAWTGSLSLAYNRVNNFYYERNTGLVASDLVNSDEEGDMPVYQYTQGDADLYSIEAQATIPFNDLWSLG
LFSDYTRGKLVDGGNLPQISPMRVGSTLNFDLQQWHAELGAIGYARQTDTADNETETAGYALVNAAATYRWYTSSGDILV
YLKGTNLLNQEARPHTSLLKDYAPLMGRNLMLGVTYNF

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1788478, Length=159, Percent_Identity=30.188679245283, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1790405, Length=146, Percent_Identity=29.4520547945205, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 81709; Mature: 81709

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLALSSIALAVASVCSSAMAAELQGQVTDQQGNALANARVSVDGGNSTTTNAQGQYQLK
CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEE
IADNSHLHLHVSHANFKHSDQEISSKTGLLIQDVTLSQTPMENIVVTASPLARSALESTT
EECCCEEEEEEECCCCCCCHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHCCC
PISVLTEDQLKLNTEPTLGDTLEKLPGVQASHFGAGASRPIIRGMGGPRVQVLENGLSVG
CEEEEECCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCEEHEECCCCCCC
DASTVSADHAVTSEAASAQQIEILRGPGTLLYGNGAIGGVVNVVDSRYSETPIDEVTGHF
CCCCCCCCHHHHHHCCCCEEEEEEECCCEEEECCCCCCHHHHHHHCCCCCCCHHHHHCCC
GARYDSANHGQTYNGELNGGNGQFNWHLDGTHRKTEDVDIPGNAIADMPTTHGTLANSQL
CCCCCCCCCCCEECCEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
KLDDYAAGVGYTGDSGFVSVSGARTESNYGIPSRGEADAPNISIDLQKTAWQLHSGLLDP
EECHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCH
FAGFSKLKFDAAYSDYQHAEEEDGVAGTTFFNKQSEARLSLNNHPWGEWQGTLGLHAVHR
HCCCHHEEEEHHHHHHHHCHHCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEHH
DFAVEGDEALTPDSKTDTLAAFIVQERKLGDFRFELGGRLEHYRLTPDSMQLDTLNGEQE
HHEECCCCCCCCCCCCHHHEEEHHHHCCCCCEEEECCCCEEEEEECCCCEEEEECCCCCC
YQPNDLTDNNVTLSAGVVWDFSPSYNLGLSLTRAERSATAEELYSYGPHDATQSFELGSQ
CCCCCCCCCCEEEEEEEEEECCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCE
FSLENGQIVANSGSNDKEIANNIDLTLRKLDGAWTGSLSLAYNRVNNFYYERNTGLVASD
EECCCCEEEECCCCCHHHHHCCCCEEEEEECCCCCCCEEEEEEHHHCEEEECCCCEEEHH
LVNSDEEGDMPVYQYTQGDADLYSIEAQATIPFNDLWSLGLFSDYTRGKLVDGGNLPQIS
HCCCCCCCCCCEEEEECCCCEEEEEEEEEECCHHHHHHHHCCCCCCCCEEECCCCCCCCC
PMRVGSTLNFDLQQWHAELGAIGYARQTDTADNETETAGYALVNAAATYRWYTSSGDILV
CEECCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCEEE
YLKGTNLLNQEARPHTSLLKDYAPLMGRNLMLGVTYNF
EECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECC
>Mature Secondary Structure
MKLALSSIALAVASVCSSAMAAELQGQVTDQQGNALANARVSVDGGNSTTTNAQGQYQLK
CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEE
IADNSHLHLHVSHANFKHSDQEISSKTGLLIQDVTLSQTPMENIVVTASPLARSALESTT
EECCCEEEEEEECCCCCCCHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHCCC
PISVLTEDQLKLNTEPTLGDTLEKLPGVQASHFGAGASRPIIRGMGGPRVQVLENGLSVG
CEEEEECCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCEEHEECCCCCCC
DASTVSADHAVTSEAASAQQIEILRGPGTLLYGNGAIGGVVNVVDSRYSETPIDEVTGHF
CCCCCCCCHHHHHHCCCCEEEEEEECCCEEEECCCCCCHHHHHHHCCCCCCCHHHHHCCC
GARYDSANHGQTYNGELNGGNGQFNWHLDGTHRKTEDVDIPGNAIADMPTTHGTLANSQL
CCCCCCCCCCCEECCEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
KLDDYAAGVGYTGDSGFVSVSGARTESNYGIPSRGEADAPNISIDLQKTAWQLHSGLLDP
EECHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCH
FAGFSKLKFDAAYSDYQHAEEEDGVAGTTFFNKQSEARLSLNNHPWGEWQGTLGLHAVHR
HCCCHHEEEEHHHHHHHHCHHCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEHH
DFAVEGDEALTPDSKTDTLAAFIVQERKLGDFRFELGGRLEHYRLTPDSMQLDTLNGEQE
HHEECCCCCCCCCCCCHHHEEEHHHHCCCCCEEEECCCCEEEEEECCCCEEEEECCCCCC
YQPNDLTDNNVTLSAGVVWDFSPSYNLGLSLTRAERSATAEELYSYGPHDATQSFELGSQ
CCCCCCCCCCEEEEEEEEEECCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCE
FSLENGQIVANSGSNDKEIANNIDLTLRKLDGAWTGSLSLAYNRVNNFYYERNTGLVASD
EECCCCEEEECCCCCHHHHHCCCCEEEEEECCCCCCCEEEEEEHHHCEEEECCCCEEEHH
LVNSDEEGDMPVYQYTQGDADLYSIEAQATIPFNDLWSLGLFSDYTRGKLVDGGNLPQIS
HCCCCCCCCCCEEEEECCCCEEEEEEEEEECCHHHHHHHHCCCCCCCCEEECCCCCCCCC
PMRVGSTLNFDLQQWHAELGAIGYARQTDTADNETETAGYALVNAAATYRWYTSSGDILV
CEECCCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCEEE
YLKGTNLLNQEARPHTSLLKDYAPLMGRNLMLGVTYNF
EECCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]