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The map label for this gene is ydiY [C]

Identifier: 117921787

GI number: 117921787

Start: 4018028

End: 4018765

Strand: Reverse

Name: ydiY [C]

Synonym: Shewana3_3349

Alternate gene names: 117921787

Gene position: 4018765-4018028 (Counterclockwise)

Preceding gene: 117921788

Following gene: 117921786

Centisome position: 80.82

GC content: 47.29

Gene sequence:

>738_bases
ATGAAGAAAGTACTGACCGCAGCGCTATTAATGACTGCGCCATTTATGGCTAATGCGGGAGCCGATTTTGTAAAAGGCGA
CAAGACATTCGCAGGTGAAGCCGAGTTAGGTGCAACCTTAACCACAGGTAACACCGATACCTCATCCTACAAGGGCCGCT
TAAGCCTAAAACACGAACTAGGTGACTGGGAAAACCAATATCTTTTAGAAGGTTTGTACAAAGAAGATACGGGTGAAGTG
ACAGCTAAACGTTATTTAGCGGGTGCTCAAGGCAACTATAAGATGACAGATCGCAGCTATCTGTTTGCCAACGCTAACTA
CGAAGTCGACCCTTTTACCGGTTATGACTACACAGTTTCAGGCGCGGCGGGTTATGGTCACAGACTCTATGACACCAGCA
AGACCTTCTTGGATGTGGAAATCGGTCCCGGTTACATCTATCAACGCCTCGATTCAGAGCAAGCCCTGCTAGAAGGCACA
GACTCGAATGACAGTGTGGTTGCCCACGGCGTGATCAACTTCGAAACTGAAATCACTGAAACCTCAAAATTCCAGCAACG
TTTTGTGGCCGACTACGGCGATAAATTAGATGCGCGTTCAGAAACCTCGCTGACTGCCAATATTATTGGCGCCTTGGCGA
TGAAGTTTGCGATTATCGTGCGTTACAACAGCGAGCCGCTGGATGATAAAAAGAGCACTGATACCGAAACGAATATGACC
TTGCTCTACTCGTTCTAA

Upstream 100 bases:

>100_bases
CTTTTTTATGCAAAAAACCGTTGAATTTTCATTTTTTAATCGTAAATGTTAGTATTGCGCAGATTTTTTAGGGGATAAAA
CGCAACAGGAACGGATAAAC

Downstream 100 bases:

>100_bases
TCAATGTGATTGATATCAATAAAAAAGCACCGAGAGGTGCTTTTTTATTGGCTGTTTTTGGACTAACTTGAAACAAAGTT
AGTTAATTCTTTATTAGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: Outer Membrane Protein; Orphan Protein; Conserved Protein YdiY; Exported Protein

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKKVLTAALLMTAPFMANAGADFVKGDKTFAGEAELGATLTTGNTDTSSYKGRLSLKHELGDWENQYLLEGLYKEDTGEV
TAKRYLAGAQGNYKMTDRSYLFANANYEVDPFTGYDYTVSGAAGYGHRLYDTSKTFLDVEIGPGYIYQRLDSEQALLEGT
DSNDSVVAHGVINFETEITETSKFQQRFVADYGDKLDARSETSLTANIIGALAMKFAIIVRYNSEPLDDKKSTDTETNMT
LLYSF

Sequences:

>Translated_245_residues
MKKVLTAALLMTAPFMANAGADFVKGDKTFAGEAELGATLTTGNTDTSSYKGRLSLKHELGDWENQYLLEGLYKEDTGEV
TAKRYLAGAQGNYKMTDRSYLFANANYEVDPFTGYDYTVSGAAGYGHRLYDTSKTFLDVEIGPGYIYQRLDSEQALLEGT
DSNDSVVAHGVINFETEITETSKFQQRFVADYGDKLDARSETSLTANIIGALAMKFAIIVRYNSEPLDDKKSTDTETNMT
LLYSF
>Mature_245_residues
MKKVLTAALLMTAPFMANAGADFVKGDKTFAGEAELGATLTTGNTDTSSYKGRLSLKHELGDWENQYLLEGLYKEDTGEV
TAKRYLAGAQGNYKMTDRSYLFANANYEVDPFTGYDYTVSGAAGYGHRLYDTSKTFLDVEIGPGYIYQRLDSEQALLEGT
DSNDSVVAHGVINFETEITETSKFQQRFVADYGDKLDARSETSLTANIIGALAMKFAIIVRYNSEPLDDKKSTDTETNMT
LLYSF

Specific function: Unknown

COG id: COG3137

COG function: function code M; Putative salt-induced outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788016, Length=229, Percent_Identity=24.4541484716157, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27048; Mature: 27048

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLTAALLMTAPFMANAGADFVKGDKTFAGEAELGATLTTGNTDTSSYKGRLSLKHEL
CCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECC
GDWENQYLLEGLYKEDTGEVTAKRYLAGAQGNYKMTDRSYLFANANYEVDPFTGYDYTVS
CCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEECCCEEEEECCCEEECCCCCCCEEEC
GAAGYGHRLYDTSKTFLDVEIGPGYIYQRLDSEQALLEGTDSNDSVVAHGVINFETEITE
CCCCCCCEEEECCCEEEEEEECCCHHHHHCCCCHHEEECCCCCCCEEEEEEEEEEECCHH
TSKFQQRFVADYGDKLDARSETSLTANIIGALAMKFAIIVRYNSEPLDDKKSTDTETNMT
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCEE
LLYSF
EEEEC
>Mature Secondary Structure
MKKVLTAALLMTAPFMANAGADFVKGDKTFAGEAELGATLTTGNTDTSSYKGRLSLKHEL
CCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECC
GDWENQYLLEGLYKEDTGEVTAKRYLAGAQGNYKMTDRSYLFANANYEVDPFTGYDYTVS
CCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEECCCEEEEECCCEEECCCCCCCEEEC
GAAGYGHRLYDTSKTFLDVEIGPGYIYQRLDSEQALLEGTDSNDSVVAHGVINFETEITE
CCCCCCCEEEECCCEEEEEEECCCHHHHHCCCCHHEEECCCCCCCEEEEEEEEEEECCHH
TSKFQQRFVADYGDKLDARSETSLTANIIGALAMKFAIIVRYNSEPLDDKKSTDTETNMT
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCCCCCEE
LLYSF
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA