Click here to switch to the map view.

The map label for this gene is rpfG [H]

Identifier: 117921772

GI number: 117921772

Start: 3996281

End: 3997276

Strand: Reverse

Name: rpfG [H]

Synonym: Shewana3_3334

Alternate gene names: 117921772

Gene position: 3997276-3996281 (Counterclockwise)

Preceding gene: 117921773

Following gene: 117921770

Centisome position: 80.39

GC content: 49.1

Gene sequence:

>996_bases
ATGCAGTCTACATCTGAACATAAGAAAACCTTATTGTTGGTGGATGATGAGCCCGTTAACTTACGGGTGCTCAAGCAAGT
TTTGCATCAGGATTACCATCTTATCTTTGCCAAAAGTGGCGAGGAGGCCCTGCGCCTCGCGCAAACTGAGTTGCCATCGC
TGATCCTACTCGACATTATGATGCCCAATATGACGGGGTTAGAAGTCTGTCAGTTACTGAAAAATATCTCTGAGACTCAG
TCGATCCCGGTGATTTTTGTCACCGCCTTAAATGATGAACACGATGAGGCGGCGGGCTTTGCCGTGGGCGGGGTGGATTA
CATTGTGAAGCCGATTTCGGCCACCATAGTCAAAGCGCGGGTGAAAACCCATTTATCCTTAGTACAGGCCGATGAATTGC
GCCGCACTCGCTTGCAAGTGATCCAACGTTTAGGTCGCGCCGCCGAATATAAAGATAATGAAACGGGCACCCATGTGCTG
CGCATGAGTCATTATTCTAAAATTTTGGCTTTGGCCTACGGCCTGAGTGAGGCGCAGGCGGATGATTTATTGCATGCGGC
GCCCATGCACGACATAGGTAAAATCGGTATTCCCGACAGCATTATGCTCAAACCGGGTAAGTTGACCGATGAAGAGTTCG
CCATTATGAAAACTCACCCCCATATTGGTGCCGAAATTATCGGTGAGGCGGATTCCGAGCTGCTGCGACTAGCCAAATCC
GTCGCGCTGACTCACCACGAGAAATGGAACGGCACAGGTTATCCTAATGGATTGAAAGGCGAAGCCATTCCATTAGAGGG
ACGCATAGTCGCCCTCGCCGATGTGTTTGACGCGCTCACCAGCAAACGTCCCTATAAAGAGGCTTGGTCAGTTGAGAAGA
CCATGGACTATATCCATGAGCAGAGCGGAGTGCATTTCGATCCTGAGCTAGTGCGGTTATTTACCGACAACTTAGACAAA
GTGCTTGAGATTAAAAATAAATGGATAGATAGCTGA

Upstream 100 bases:

>100_bases
CGGCCATTATTGCTGAGGCGCTAGACAACTTTGATTTTGATATTGCCCATAATGAATTGACCGAGTTACGGCGTTTTATC
ACCGCGAATAAGGAGTAGCA

Downstream 100 bases:

>100_bases
TATTAGATTCGCTACAAAAGATAAGGCTCTTGATGCGAGCCTTATTGCTACTCGAATTAAAGCTTTAGGTAAAAATCTTT
GGTCAGGGCAATCATTTGCT

Product: response regulator receiver modulated metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MQSTSEHKKTLLLVDDEPVNLRVLKQVLHQDYHLIFAKSGEEALRLAQTELPSLILLDIMMPNMTGLEVCQLLKNISETQ
SIPVIFVTALNDEHDEAAGFAVGGVDYIVKPISATIVKARVKTHLSLVQADELRRTRLQVIQRLGRAAEYKDNETGTHVL
RMSHYSKILALAYGLSEAQADDLLHAAPMHDIGKIGIPDSIMLKPGKLTDEEFAIMKTHPHIGAEIIGEADSELLRLAKS
VALTHHEKWNGTGYPNGLKGEAIPLEGRIVALADVFDALTSKRPYKEAWSVEKTMDYIHEQSGVHFDPELVRLFTDNLDK
VLEIKNKWIDS

Sequences:

>Translated_331_residues
MQSTSEHKKTLLLVDDEPVNLRVLKQVLHQDYHLIFAKSGEEALRLAQTELPSLILLDIMMPNMTGLEVCQLLKNISETQ
SIPVIFVTALNDEHDEAAGFAVGGVDYIVKPISATIVKARVKTHLSLVQADELRRTRLQVIQRLGRAAEYKDNETGTHVL
RMSHYSKILALAYGLSEAQADDLLHAAPMHDIGKIGIPDSIMLKPGKLTDEEFAIMKTHPHIGAEIIGEADSELLRLAKS
VALTHHEKWNGTGYPNGLKGEAIPLEGRIVALADVFDALTSKRPYKEAWSVEKTMDYIHEQSGVHFDPELVRLFTDNLDK
VLEIKNKWIDS
>Mature_331_residues
MQSTSEHKKTLLLVDDEPVNLRVLKQVLHQDYHLIFAKSGEEALRLAQTELPSLILLDIMMPNMTGLEVCQLLKNISETQ
SIPVIFVTALNDEHDEAAGFAVGGVDYIVKPISATIVKARVKTHLSLVQADELRRTRLQVIQRLGRAAEYKDNETGTHVL
RMSHYSKILALAYGLSEAQADDLLHAAPMHDIGKIGIPDSIMLKPGKLTDEEFAIMKTHPHIGAEIIGEADSELLRLAKS
VALTHHEKWNGTGYPNGLKGEAIPLEGRIVALADVFDALTSKRPYKEAWSVEKTMDYIHEQSGVHFDPELVRLFTDNLDK
VLEIKNKWIDS

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG3437

COG function: function code KT; Response regulator containing a CheY-like receiver domain and an HD-GYP domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788394, Length=121, Percent_Identity=37.1900826446281, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790860, Length=124, Percent_Identity=32.258064516129, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786599, Length=115, Percent_Identity=32.1739130434783, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789809, Length=125, Percent_Identity=34.4, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87082012, Length=116, Percent_Identity=36.2068965517241, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789149, Length=104, Percent_Identity=35.5769230769231, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 36931; Mature: 36931

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSTSEHKKTLLLVDDEPVNLRVLKQVLHQDYHLIFAKSGEEALRLAQTELPSLILLDIM
CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCHHHHHHHH
MPNMTGLEVCQLLKNISETQSIPVIFVTALNDEHDEAAGFAVGGVDYIVKPISATIVKAR
CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCEEECCHHHHHHHHHHHHHHHH
VKTHLSLVQADELRRTRLQVIQRLGRAAEYKDNETGTHVLRMSHYSKILALAYGLSEAQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEHHHHHHHHHHHHHCCCHHHH
DDLLHAAPMHDIGKIGIPDSIMLKPGKLTDEEFAIMKTHPHIGAEIIGEADSELLRLAKS
HHHHHHCCCHHCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCHHHHCCCHHHHHHHHHH
VALTHHEKWNGTGYPNGLKGEAIPLEGRIVALADVFDALTSKRPYKEAWSVEKTMDYIHE
HHHHHCCCCCCCCCCCCCCCCEECCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
QSGVHFDPELVRLFTDNLDKVLEIKNKWIDS
HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQSTSEHKKTLLLVDDEPVNLRVLKQVLHQDYHLIFAKSGEEALRLAQTELPSLILLDIM
CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCHHHHHHHH
MPNMTGLEVCQLLKNISETQSIPVIFVTALNDEHDEAAGFAVGGVDYIVKPISATIVKAR
CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCEEECCHHHHHHHHHHHHHHHH
VKTHLSLVQADELRRTRLQVIQRLGRAAEYKDNETGTHVLRMSHYSKILALAYGLSEAQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEHHHHHHHHHHHHHCCCHHHH
DDLLHAAPMHDIGKIGIPDSIMLKPGKLTDEEFAIMKTHPHIGAEIIGEADSELLRLAKS
HHHHHHCCCHHCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCHHHHCCCHHHHHHHHHH
VALTHHEKWNGTGYPNGLKGEAIPLEGRIVALADVFDALTSKRPYKEAWSVEKTMDYIHE
HHHHHCCCCCCCCCCCCCCCCEECCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
QSGVHFDPELVRLFTDNLDKVLEIKNKWIDS
HCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]