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The map label for this gene is yggB [C]

Identifier: 117921760

GI number: 117921760

Start: 3983290

End: 3983835

Strand: Reverse

Name: yggB [C]

Synonym: Shewana3_3322

Alternate gene names: 117921760

Gene position: 3983835-3983290 (Counterclockwise)

Preceding gene: 117921765

Following gene: 117921759

Centisome position: 80.12

GC content: 47.62

Gene sequence:

>546_bases
ATGACAAATCAAATCCTGCTTGCCTGTATTTATCTTGCGGTGTTTCTCTTTTTGCAGCGTGCCTTAACTCAATGGGTGAA
AAAACTCTCATTGATGAAGCAGGTGAGTGCCGCCCGTACCAGTCTTGTCACCCGGTTTATTTCCTATGTGATGTTTTTTA
TCACTCTGTCTTTGATGGCGGTATCCCTTGGCTTGGGTTATCAGGACGTGTCGCTGTTTGTCTCCTCCGCATTTGCGGTG
ATGGGCGTTGCCTTAGTCGCTCAGTGGTCGATACTGAGTAATTTAACCGCTGGTGTGCTGATTTTCTTTGTGTTCCCGTA
TCGAATTGGTGAACGTATCCGGGTGGTGGATAAGGATGAAGATATCAGTGGCGTGATTATTGAAATCGCGCTGTTTCATG
TGCTTATCCTTAGGGACAATGGCGATACCATCACCTATCCCAATAATTTGATGCTGCAAAAGGCGGTGTTGAAGCTGGCC
GATCAGGCACCGCTTGCCGAGCGCCAAGCGTTGCTGGATGGCAAAAAGAAACTCGACCTCGAGTAA

Upstream 100 bases:

>100_bases
AGTACTTATTACTCTATTTGCGTTGGGCTGATTTGGGACTCTATAACTGCTGGTGCAAAAAAGTTAGAATTCAGCTGGTT
TCGTTTTTTAAGTGGCTATT

Downstream 100 bases:

>100_bases
CTATTCTCCTTTATGTGCGCCGCAGCAGTACATTTATTAGCAAACTGTTGTCGGCGCGTCGCGAACTGATGAGATTTATT
ATCTTCCCGTGAGCTTTACT

Product: hypothetical protein

Products: NA

Alternate protein names: Small-Conductance Mechanosensitive Ion Channel Protein; Mscs Mechanosensitive Ion Channel; MscS Mechanosensitive Ion Channel

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MTNQILLACIYLAVFLFLQRALTQWVKKLSLMKQVSAARTSLVTRFISYVMFFITLSLMAVSLGLGYQDVSLFVSSAFAV
MGVALVAQWSILSNLTAGVLIFFVFPYRIGERIRVVDKDEDISGVIIEIALFHVLILRDNGDTITYPNNLMLQKAVLKLA
DQAPLAERQALLDGKKKLDLE

Sequences:

>Translated_181_residues
MTNQILLACIYLAVFLFLQRALTQWVKKLSLMKQVSAARTSLVTRFISYVMFFITLSLMAVSLGLGYQDVSLFVSSAFAV
MGVALVAQWSILSNLTAGVLIFFVFPYRIGERIRVVDKDEDISGVIIEIALFHVLILRDNGDTITYPNNLMLQKAVLKLA
DQAPLAERQALLDGKKKLDLE
>Mature_180_residues
TNQILLACIYLAVFLFLQRALTQWVKKLSLMKQVSAARTSLVTRFISYVMFFITLSLMAVSLGLGYQDVSLFVSSAFAVM
GVALVAQWSILSNLTAGVLIFFVFPYRIGERIRVVDKDEDISGVIIEIALFHVLILRDNGDTITYPNNLMLQKAVLKLAD
QAPLAERQALLDGKKKLDLE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20234; Mature: 20103

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNQILLACIYLAVFLFLQRALTQWVKKLSLMKQVSAARTSLVTRFISYVMFFITLSLMA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSLGLGYQDVSLFVSSAFAVMGVALVAQWSILSNLTAGVLIFFVFPYRIGERIRVVDKDE
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
DISGVIIEIALFHVLILRDNGDTITYPNNLMLQKAVLKLADQAPLAERQALLDGKKKLDL
CHHHHHHHHHHHHHHHEECCCCEEECCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHCCC
E
C
>Mature Secondary Structure 
TNQILLACIYLAVFLFLQRALTQWVKKLSLMKQVSAARTSLVTRFISYVMFFITLSLMA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSLGLGYQDVSLFVSSAFAVMGVALVAQWSILSNLTAGVLIFFVFPYRIGERIRVVDKDE
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
DISGVIIEIALFHVLILRDNGDTITYPNNLMLQKAVLKLADQAPLAERQALLDGKKKLDL
CHHHHHHHHHHHHHHHEECCCCEEECCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA