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The map label for this gene is yxjO [H]

Identifier: 117921731

GI number: 117921731

Start: 3942279

End: 3943205

Strand: Reverse

Name: yxjO [H]

Synonym: Shewana3_3293

Alternate gene names: 117921731

Gene position: 3943205-3942279 (Counterclockwise)

Preceding gene: 117921734

Following gene: 117921730

Centisome position: 79.3

GC content: 47.68

Gene sequence:

>927_bases
ATGCTGAATCAACAATGGCTGCAGACCTTCGTGACCCTGATTGAGGTCGGGCACTTTACTCTGACGGCTAAAAAGCTGTT
TATGACTCAACCTGGGGTTAGCCAACATATTAAAAAGTTGGAAGAACAGGTGGGTGTGTCCCTGATACTGCGACAGGGTA
AGCGCTTTGAGTTGACAGAAGCGGGCAGCATTCTCTATCAATATGCCCGTGACTATCGACAAGCCGAAACAGAGCTGTTA
GCGCGATTGCAAACCGACGAACCCAATATTGGTGAGTGCCGTTTTGGCTGCTCGGGGGCGATAGCAAGTTTGCTCTATCC
GCATTTTCTAGAGAGACAAATTCAGTATCCCAGCTTGAATGTGATGTTAGAGGCGGCGCCCAACCAACGCATAGTGTCGG
GCATTTTAAATAACCAGCTCGATGTGGGCATAGTCACTAAGCGCACAGATGAAGCTGAGCTCAGTTATCAAGCCATAGGC
TATGCGGAGTTAGCCTTAGTGCTGCCAAGCCAGTATCAAAGTATGCCGTTAGATAGAAAACGCCTGGAACATATTGGTTT
TATTGATCATCCCGATGGACAATATTATCTGCAGCAAGTCCTCAGAGCCAATTTCGGCGAAGCTGAAGCGACACGCAATG
CCCGCGGGAGTCAGCGACATGTTAGTGGCATCGCCCAGCAGATCCCACGCAGGGGTTATGTTAATCAGCTCAATCAAATC
TTACTGCCTGTCGCTAAAGGCATTGGTTTTACTGTGCTTCCTTTAACTACGGTCAACGCCTTTATACCTAGGGAGAGTCT
ATGGGCGGTAGAACTTGAGCAAAAAGTGCAGGAGTCGCTGTATTTAGTGCATAAAAACACTCGGCCTTTACCTTCTCGAT
TTGAGGCATTTATTGACTTAGCGATTCGTCTGATAGCTAACGAGTAA

Upstream 100 bases:

>100_bases
AGTTTATGGTGTTCGATTAACAATTAAAAATTATCAAATTTTCTTATTTTGATAATTTTTGTTTATTATTGGTGGGCGAA
ATGATCGATAGAGAGTGCAT

Downstream 100 bases:

>100_bases
CAACTAAAAAGTCTCTCCTAATCGCTGTTGTTTGGATGGTCATACTGAAAATGACATTGTTTTTAGTATTGATAATTGCT
GATTGAATTTTTATTGGTAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MLNQQWLQTFVTLIEVGHFTLTAKKLFMTQPGVSQHIKKLEEQVGVSLILRQGKRFELTEAGSILYQYARDYRQAETELL
ARLQTDEPNIGECRFGCSGAIASLLYPHFLERQIQYPSLNVMLEAAPNQRIVSGILNNQLDVGIVTKRTDEAELSYQAIG
YAELALVLPSQYQSMPLDRKRLEHIGFIDHPDGQYYLQQVLRANFGEAEATRNARGSQRHVSGIAQQIPRRGYVNQLNQI
LLPVAKGIGFTVLPLTTVNAFIPRESLWAVELEQKVQESLYLVHKNTRPLPSRFEAFIDLAIRLIANE

Sequences:

>Translated_308_residues
MLNQQWLQTFVTLIEVGHFTLTAKKLFMTQPGVSQHIKKLEEQVGVSLILRQGKRFELTEAGSILYQYARDYRQAETELL
ARLQTDEPNIGECRFGCSGAIASLLYPHFLERQIQYPSLNVMLEAAPNQRIVSGILNNQLDVGIVTKRTDEAELSYQAIG
YAELALVLPSQYQSMPLDRKRLEHIGFIDHPDGQYYLQQVLRANFGEAEATRNARGSQRHVSGIAQQIPRRGYVNQLNQI
LLPVAKGIGFTVLPLTTVNAFIPRESLWAVELEQKVQESLYLVHKNTRPLPSRFEAFIDLAIRLIANE
>Mature_308_residues
MLNQQWLQTFVTLIEVGHFTLTAKKLFMTQPGVSQHIKKLEEQVGVSLILRQGKRFELTEAGSILYQYARDYRQAETELL
ARLQTDEPNIGECRFGCSGAIASLLYPHFLERQIQYPSLNVMLEAAPNQRIVSGILNNQLDVGIVTKRTDEAELSYQAIG
YAELALVLPSQYQSMPLDRKRLEHIGFIDHPDGQYYLQQVLRANFGEAEATRNARGSQRHVSGIAQQIPRRGYVNQLNQI
LLPVAKGIGFTVLPLTTVNAFIPRESLWAVELEQKVQESLYLVHKNTRPLPSRFEAFIDLAIRLIANE

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=168, Percent_Identity=31.547619047619, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788297, Length=270, Percent_Identity=22.962962962963, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48994962, Length=183, Percent_Identity=31.1475409836066, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789639, Length=202, Percent_Identity=25.7425742574257, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34960; Mature: 34960

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNQQWLQTFVTLIEVGHFTLTAKKLFMTQPGVSQHIKKLEEQVGVSLILRQGKRFELTE
CCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHH
AGSILYQYARDYRQAETELLARLQTDEPNIGECRFGCSGAIASLLYPHFLERQIQYPSLN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
VMLEAAPNQRIVSGILNNQLDVGIVTKRTDEAELSYQAIGYAELALVLPSQYQSMPLDRK
EEEECCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCHH
RLEHIGFIDHPDGQYYLQQVLRANFGEAEATRNARGSQRHVSGIAQQIPRRGYVNQLNQI
HHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
LLPVAKGIGFTVLPLTTVNAFIPRESLWAVELEQKVQESLYLVHKNTRPLPSRFEAFIDL
HHHHHHCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHEEHCCCCCCCHHHHHHHHHH
AIRLIANE
HHHHHCCC
>Mature Secondary Structure
MLNQQWLQTFVTLIEVGHFTLTAKKLFMTQPGVSQHIKKLEEQVGVSLILRQGKRFELTE
CCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHH
AGSILYQYARDYRQAETELLARLQTDEPNIGECRFGCSGAIASLLYPHFLERQIQYPSLN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
VMLEAAPNQRIVSGILNNQLDVGIVTKRTDEAELSYQAIGYAELALVLPSQYQSMPLDRK
EEEECCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCHH
RLEHIGFIDHPDGQYYLQQVLRANFGEAEATRNARGSQRHVSGIAQQIPRRGYVNQLNQI
HHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHH
LLPVAKGIGFTVLPLTTVNAFIPRESLWAVELEQKVQESLYLVHKNTRPLPSRFEAFIDL
HHHHHHCCCEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHEEHCCCCCCCHHHHHHHHHH
AIRLIANE
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]