Click here to switch to the map view.

The map label for this gene is ybjY [C]

Identifier: 117921700

GI number: 117921700

Start: 3903663

End: 3904925

Strand: Reverse

Name: ybjY [C]

Synonym: Shewana3_3262

Alternate gene names: 117921700

Gene position: 3904925-3903663 (Counterclockwise)

Preceding gene: 117921705

Following gene: 117921699

Centisome position: 78.54

GC content: 51.94

Gene sequence:

>1263_bases
ATGATTAAAGATACCAGCGGCCAGGATAAAGTCCTTGTGCCATCGACCGCTAAACGCCTCAAGTTGCCTCTGATGATTGG
CGGCTGCACCTTACTGGTTAGCGCCTTAGTGTGGGCCAGTTTTGGTAGCGATAAAGTCAGCCAGTCCATCAGCCGTAGCG
AGCTCACCACCGCTACTTTATATGTTGGCACGCTCACTCGAGATGTGGCCACCACGGGCAAAATTGTTGCCGCCAATGCG
CCGATCCTCTACAGCACCGAAGAAGGCACAGTGACGCTACTGAGCAACCCAGGGGATAGCGTCAGCAAGGGTGATGTGGT
CGCAAAGCTGGAGAGTCCAAGATTAACCAATCAATTAGAGCAGGCCAAATCGCTATTGGCGGGATTAGAGAGCGCCCTTG
AACGTGCCAAGCTAGACGCTAGACGTAACCAATTACAAGTCAATCAAACCTTAGACATGGCCTCGGTCGATTTGGAAGCC
GCCGATCGGGAGAGCCGTCGTGGGGATTTACTGATCCAATCTAAACTGATCAGCCAAATCGACTATGAGAAGGGTAAGGA
CGATCTGCACAAGGCAAAACTCAAATTTAAGCATGCGGAGCAGGAAGTGGCCTTAACCAAGGATACCTTAACCTTTGAGG
TGAAAAACAAGGCCTTGGAAGTTGAGCGGCAGAGTCTGGCGGTAAAAGAGCTTGAGCGTCAGGTCGACGCCTTAAATATC
AAGGCGCCAGTGAGCGGCATTATTGGTAACTGGTTGACCGAGCAAAAAACGCGTTTAAGCGCTAATCAACCCATTCTGAC
CGTAGTCGATTTAAGTGCCTATGAGGCCGAGTTAGCGGTGCCGGAATCCTACGCCGACGAGTTAGGACTCGGAATGGAGG
TCGAACTGAGCTTCGGTGAAGTCAAACTCATGGGCAAACTATCCTCGATTTCCCCCGAAGTGCGTAACCGTGAGGTGACC
GCCAGAGTGCAATTTGTGCAGAGTGAAAGCTTGAAGCTGCGCCAAAACCAACGGATCTCCGCCAGAGTCTTGCTCGAGCA
CAGGGCGAATGTGTTGATGGTTAAACGCGGTGCCTTTATGACCAGCGGTGGTGGCGATGAGGTTTACCAAGTCGAAGGCG
ATATTGCTACCCGCCGCGACATTAAGCTCGGCAGTACCAGTATGAGTCTGGTGGAAGTGATCGAAGGCGGTAAAGCGGGT
GACGAATGGGTGATCTCCAGTGTTGAGCCCTTCAACCATGCCGAACAGGTCAAAATGCATTGA

Upstream 100 bases:

>100_bases
ATGAAATTGGCATAGGCGTTGCTATTACTAGATATCGATTTTTAATAGTGTCCGTAGCGATGGGCCTATCCAGCCCTCCG
ACAGGGAAGCGAGAAACGCC

Downstream 100 bases:

>100_bases
TGACCGATAGTCAAAAATTACTTATTAATCAAATTGATGTAATTAACGCCGCTCTGGCTAAAAAGTCTGCGGCTAAGGTG
TACAAGGAGTTCATTATGCG

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: Efflux Transporter RND Family MFP Subunit; ABC Transporter Permease; HlyD Family Secretion Protein; Efflux Transporter Rnd Family Mfp Subunit; Efflux Transporter MFP Component RND Family; Secretion Protein HlyD; Efflux Transporter MFP Component RND Family Protein; ABC Transporter Component Protein; Efflux Transporter MFP Subunit; Membrane-Fusion Protein; Membrane Fusion Protein; ABC Transporter Permease Protein; Efflux Transporter; Hlyd Family Secretion Protein; HlyD Family Transporter Protein; HlyD Family Transporter

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MIKDTSGQDKVLVPSTAKRLKLPLMIGGCTLLVSALVWASFGSDKVSQSISRSELTTATLYVGTLTRDVATTGKIVAANA
PILYSTEEGTVTLLSNPGDSVSKGDVVAKLESPRLTNQLEQAKSLLAGLESALERAKLDARRNQLQVNQTLDMASVDLEA
ADRESRRGDLLIQSKLISQIDYEKGKDDLHKAKLKFKHAEQEVALTKDTLTFEVKNKALEVERQSLAVKELERQVDALNI
KAPVSGIIGNWLTEQKTRLSANQPILTVVDLSAYEAELAVPESYADELGLGMEVELSFGEVKLMGKLSSISPEVRNREVT
ARVQFVQSESLKLRQNQRISARVLLEHRANVLMVKRGAFMTSGGGDEVYQVEGDIATRRDIKLGSTSMSLVEVIEGGKAG
DEWVISSVEPFNHAEQVKMH

Sequences:

>Translated_420_residues
MIKDTSGQDKVLVPSTAKRLKLPLMIGGCTLLVSALVWASFGSDKVSQSISRSELTTATLYVGTLTRDVATTGKIVAANA
PILYSTEEGTVTLLSNPGDSVSKGDVVAKLESPRLTNQLEQAKSLLAGLESALERAKLDARRNQLQVNQTLDMASVDLEA
ADRESRRGDLLIQSKLISQIDYEKGKDDLHKAKLKFKHAEQEVALTKDTLTFEVKNKALEVERQSLAVKELERQVDALNI
KAPVSGIIGNWLTEQKTRLSANQPILTVVDLSAYEAELAVPESYADELGLGMEVELSFGEVKLMGKLSSISPEVRNREVT
ARVQFVQSESLKLRQNQRISARVLLEHRANVLMVKRGAFMTSGGGDEVYQVEGDIATRRDIKLGSTSMSLVEVIEGGKAG
DEWVISSVEPFNHAEQVKMH
>Mature_420_residues
MIKDTSGQDKVLVPSTAKRLKLPLMIGGCTLLVSALVWASFGSDKVSQSISRSELTTATLYVGTLTRDVATTGKIVAANA
PILYSTEEGTVTLLSNPGDSVSKGDVVAKLESPRLTNQLEQAKSLLAGLESALERAKLDARRNQLQVNQTLDMASVDLEA
ADRESRRGDLLIQSKLISQIDYEKGKDDLHKAKLKFKHAEQEVALTKDTLTFEVKNKALEVERQSLAVKELERQVDALNI
KAPVSGIIGNWLTEQKTRLSANQPILTVVDLSAYEAELAVPESYADELGLGMEVELSFGEVKLMGKLSSISPEVRNREVT
ARVQFVQSESLKLRQNQRISARVLLEHRANVLMVKRGAFMTSGGGDEVYQVEGDIATRRDIKLGSTSMSLVEVIEGGKAG
DEWVISSVEPFNHAEQVKMH

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45914; Mature: 45914

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKDTSGQDKVLVPSTAKRLKLPLMIGGCTLLVSALVWASFGSDKVSQSISRSELTTATL
CCCCCCCCCEEECCCCHHHEECCEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHCEEEEE
YVGTLTRDVATTGKIVAANAPILYSTEEGTVTLLSNPGDSVSKGDVVAKLESPRLTNQLE
EEEHHHHHHHCCCCEEEECCCEEEECCCCEEEEEECCCCCCCCCCEEEEECCCHHHHHHH
QAKSLLAGLESALERAKLDARRNQLQVNQTLDMASVDLEAADRESRRGDLLIQSKLISQI
HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHCCCHHCCCCCCCCCEEHHHHHHHHH
DYEKGKDDLHKAKLKFKHAEQEVALTKDTLTFEVKNKALEVERQSLAVKELERQVDALNI
CCCCCHHHHHHHHHHHHHCCHHHEEEECEEEEEECCHHHHHHHHHHHHHHHHHHHHHEEE
KAPVSGIIGNWLTEQKTRLSANQPILTVVDLSAYEAELAVPESYADELGLGMEVELSFGE
CCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHEECCCHHHHHHHCCCEEEEEECCC
VKLMGKLSSISPEVRNREVTARVQFVQSESLKLRQNQRISARVLLEHRANVLMVKRGAFM
EEEEEEHHHCCCHHHCCEEEEEEEEECCCCHHHHCCCCCHHHHEECCCCCEEEEECCCEE
TSGGGDEVYQVEGDIATRRDIKLGSTSMSLVEVIEGGKAGDEWVISSVEPFNHAEQVKMH
ECCCCCEEEEECCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCEEECCCCCCCCHHCCCC
>Mature Secondary Structure
MIKDTSGQDKVLVPSTAKRLKLPLMIGGCTLLVSALVWASFGSDKVSQSISRSELTTATL
CCCCCCCCCEEECCCCHHHEECCEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHCEEEEE
YVGTLTRDVATTGKIVAANAPILYSTEEGTVTLLSNPGDSVSKGDVVAKLESPRLTNQLE
EEEHHHHHHHCCCCEEEECCCEEEECCCCEEEEEECCCCCCCCCCEEEEECCCHHHHHHH
QAKSLLAGLESALERAKLDARRNQLQVNQTLDMASVDLEAADRESRRGDLLIQSKLISQI
HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHCCCHHCCCCCCCCCEEHHHHHHHHH
DYEKGKDDLHKAKLKFKHAEQEVALTKDTLTFEVKNKALEVERQSLAVKELERQVDALNI
CCCCCHHHHHHHHHHHHHCCHHHEEEECEEEEEECCHHHHHHHHHHHHHHHHHHHHHEEE
KAPVSGIIGNWLTEQKTRLSANQPILTVVDLSAYEAELAVPESYADELGLGMEVELSFGE
CCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHEECCCHHHHHHHCCCEEEEEECCC
VKLMGKLSSISPEVRNREVTARVQFVQSESLKLRQNQRISARVLLEHRANVLMVKRGAFM
EEEEEEHHHCCCHHHCCEEEEEEEEECCCCHHHHCCCCCHHHHEECCCCCEEEEECCCEE
TSGGGDEVYQVEGDIATRRDIKLGSTSMSLVEVIEGGKAGDEWVISSVEPFNHAEQVKMH
ECCCCCEEEEECCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCEEECCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA