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The map label for this gene is ntrY [H]

Identifier: 117921694

GI number: 117921694

Start: 3896703

End: 3898358

Strand: Reverse

Name: ntrY [H]

Synonym: Shewana3_3256

Alternate gene names: 117921694

Gene position: 3898358-3896703 (Counterclockwise)

Preceding gene: 117921695

Following gene: 117921693

Centisome position: 78.4

GC content: 48.55

Gene sequence:

>1656_bases
GTGCAACTGCGAACAAAATTAATCATTTATTCAACCGTTTGTTGCGCCTTAGGTGTGCTCTTGACCTTAGGTGTTGTGAG
CTATCGTCCGACTATCTCGCCCGTTGAAGTCGCTGCGCCCATCAAGATCCCCGATATAACTATACCGCCCCTCGATGTAG
ATAAGCTGCAAGAGACTGTCGAGGCAGCGATTAAAAATAACGAGCAATTACAGCAAACTCTGCCATTGCAGGAGCGTTTA
AGGGCGGAACAGATTAAGCATGAGCTGCAAAAGTTGGAGCAACTTAAGCAAGAACAGCTGCAAATTAAGCTCTATAAACT
CGAGCAACTTAAAGACGGACTCTTTAGCCCTTCAGTCCATCCTGAAGTGCCCCCCATAGCGCCACCCGCTGAACCTATCT
CGCTGCCTAAGTTGAAGTTAGAACACGAGGCCGAGTCCACACCGCCAATCACTGAATGGCTATTCATATTACTGTTTTCC
TGCGGCATCTGTGCCTTGGGTGTGGCTTGGTTTACCCGCCATTTAGCTCGCAGTCTCAATGCCTTAGAGGTTGGTTTACT
CAACTTTAACGACAATGACTTTAGCGTCAGCATTCCGGCTAATGGTGAGGGGCAGCTGAAAGCATTGGCGGAGTTATTCA
ATGATTCGGCGGCTAAGTTGCGCCAAGAGCGGCAATATATTTACCAGCGCGAATTGCTGCTGGATAAGGTAATTCAAAGC
TCTCCGAATGTGATGCTGCTGTTTAACGATCACCAAAAACTCATGTATGCCAACGATGCGGCGCGGCATCTTTTTCATAT
CAAAGGCAAAATGGAAGGCTTGAGCCTCGACGAGCTGCTGCAAGACTTACCCGAAGCGCTTGCCTTGGCCCTTAAGCAGG
AAAAGAGCGGCCTGTTTACCATGGGCGAGGATGATACTGAGACTTGGTATCTGAGCCGTGGCCAGTTTTTACTGAATAAC
CAACAGCATAACTTAATCTTGCTCAAGCAGATGACCCGAGAGCTTAATCGTCAGGAAGTGGCGGTATGGAAGAAGGTGAT
CCGCATTATCAGCCATGAGCTAAATAATTCCGTCGCGCCCATCGCCTCCATGGTGAACTCGGGGCGTTTACTGACGAAAG
ATCTCGATAATCCCAAGCTTAAGCTGATATTCGACACCATAGAGAGTCGCACGAATCACTTGAGCCAGTTTATTTTCAAT
TATGCGCGCTTTGCTAAACTGCCTTTACCGCAGCGACGTGATGTGCCGTGGCAGCAGCTTATCGAGCATTTAACCCAACA
TTACCCTTTTACCTTAGCCAATGAGTTACCCGCTGAAATGGGCTATTTCGACCAAGGGCAAATGGAGCAAGTCCTGCTGA
ATTTACTGAAAAATGCCCATGAATCAGGTTCTAATCCCGATGAAGTCACGCTCTCGATTCGCCACCAAACCATGGTCGAT
GGGACGGGCTTTAGTATCAAAATCGAAGATTGTGGCAGTGGTATGTCCGAGGAAGTGTTAGAGCAAGCCCTATTGCCCTT
TTACTCGACTAAACAATCGGGCACGGGTTTAGGCCTGCCCCTTTGCCGCGAAATTATCGAAGCCCACGATGGTAGCATAA
GCATGCATAATCGCAGCGACGGCGGCCTATCGGTACATTTGTGGCTGCCGCAATAA

Upstream 100 bases:

>100_bases
TTAGGCTTGAGTCGACAGGCCTTGTATCGCCGCATGGATAAGTTTGGTCTAGAAAAATAACCATAGCATGATAAACACTG
AGCATTAGGCGGAATTTTAG

Downstream 100 bases:

>100_bases
ACCGCGTTTAAGTGTGTATCAAGAGGTTTCACTCCTCAGCCGAATGTATTACCCAAATGGGCTATTTTGCGGTTTTTACC
TTAGCTTTTCGGGCTAATTT

Product: ATPase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 551; Mature: 551

Protein sequence:

>551_residues
MQLRTKLIIYSTVCCALGVLLTLGVVSYRPTISPVEVAAPIKIPDITIPPLDVDKLQETVEAAIKNNEQLQQTLPLQERL
RAEQIKHELQKLEQLKQEQLQIKLYKLEQLKDGLFSPSVHPEVPPIAPPAEPISLPKLKLEHEAESTPPITEWLFILLFS
CGICALGVAWFTRHLARSLNALEVGLLNFNDNDFSVSIPANGEGQLKALAELFNDSAAKLRQERQYIYQRELLLDKVIQS
SPNVMLLFNDHQKLMYANDAARHLFHIKGKMEGLSLDELLQDLPEALALALKQEKSGLFTMGEDDTETWYLSRGQFLLNN
QQHNLILLKQMTRELNRQEVAVWKKVIRIISHELNNSVAPIASMVNSGRLLTKDLDNPKLKLIFDTIESRTNHLSQFIFN
YARFAKLPLPQRRDVPWQQLIEHLTQHYPFTLANELPAEMGYFDQGQMEQVLLNLLKNAHESGSNPDEVTLSIRHQTMVD
GTGFSIKIEDCGSGMSEEVLEQALLPFYSTKQSGTGLGLPLCREIIEAHDGSISMHNRSDGGLSVHLWLPQ

Sequences:

>Translated_551_residues
MQLRTKLIIYSTVCCALGVLLTLGVVSYRPTISPVEVAAPIKIPDITIPPLDVDKLQETVEAAIKNNEQLQQTLPLQERL
RAEQIKHELQKLEQLKQEQLQIKLYKLEQLKDGLFSPSVHPEVPPIAPPAEPISLPKLKLEHEAESTPPITEWLFILLFS
CGICALGVAWFTRHLARSLNALEVGLLNFNDNDFSVSIPANGEGQLKALAELFNDSAAKLRQERQYIYQRELLLDKVIQS
SPNVMLLFNDHQKLMYANDAARHLFHIKGKMEGLSLDELLQDLPEALALALKQEKSGLFTMGEDDTETWYLSRGQFLLNN
QQHNLILLKQMTRELNRQEVAVWKKVIRIISHELNNSVAPIASMVNSGRLLTKDLDNPKLKLIFDTIESRTNHLSQFIFN
YARFAKLPLPQRRDVPWQQLIEHLTQHYPFTLANELPAEMGYFDQGQMEQVLLNLLKNAHESGSNPDEVTLSIRHQTMVD
GTGFSIKIEDCGSGMSEEVLEQALLPFYSTKQSGTGLGLPLCREIIEAHDGSISMHNRSDGGLSVHLWLPQ
>Mature_551_residues
MQLRTKLIIYSTVCCALGVLLTLGVVSYRPTISPVEVAAPIKIPDITIPPLDVDKLQETVEAAIKNNEQLQQTLPLQERL
RAEQIKHELQKLEQLKQEQLQIKLYKLEQLKDGLFSPSVHPEVPPIAPPAEPISLPKLKLEHEAESTPPITEWLFILLFS
CGICALGVAWFTRHLARSLNALEVGLLNFNDNDFSVSIPANGEGQLKALAELFNDSAAKLRQERQYIYQRELLLDKVIQS
SPNVMLLFNDHQKLMYANDAARHLFHIKGKMEGLSLDELLQDLPEALALALKQEKSGLFTMGEDDTETWYLSRGQFLLNN
QQHNLILLKQMTRELNRQEVAVWKKVIRIISHELNNSVAPIASMVNSGRLLTKDLDNPKLKLIFDTIESRTNHLSQFIFN
YARFAKLPLPQRRDVPWQQLIEHLTQHYPFTLANELPAEMGYFDQGQMEQVLLNLLKNAHESGSNPDEVTLSIRHQTMVD
GTGFSIKIEDCGSGMSEEVLEQALLPFYSTKQSGTGLGLPLCREIIEAHDGSISMHNRSDGGLSVHLWLPQ

Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]

COG id: COG5000

COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790300, Length=333, Percent_Identity=25.8258258258258, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1790436, Length=121, Percent_Identity=32.2314049586777, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788549, Length=244, Percent_Identity=28.2786885245902, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1790346, Length=194, Percent_Identity=28.8659793814433, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR017232 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 62282; Mature: 62282

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLRTKLIIYSTVCCALGVLLTLGVVSYRPTISPVEVAAPIKIPDITIPPLDVDKLQETV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHH
EAAIKNNEQLQQTLPLQERLRAEQIKHELQKLEQLKQEQLQIKLYKLEQLKDGLFSPSVH
HHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PEVPPIAPPAEPISLPKLKLEHEAESTPPITEWLFILLFSCGICALGVAWFTRHLARSLN
CCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ALEVGLLNFNDNDFSVSIPANGEGQLKALAELFNDSAAKLRQERQYIYQRELLLDKVIQS
HHEEEEEEECCCCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
SPNVMLLFNDHQKLMYANDAARHLFHIKGKMEGLSLDELLQDLPEALALALKQEKSGLFT
CCCEEEEECCCCCEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
MGEDDTETWYLSRGQFLLNNQQHNLILLKQMTRELNRQEVAVWKKVIRIISHELNNSVAP
ECCCCCCEEEEECCEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IASMVNSGRLLTKDLDNPKLKLIFDTIESRTNHLSQFIFNYARFAKLPLPQRRDVPWQQL
HHHHHHCCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
IEHLTQHYPFTLANELPAEMGYFDQGQMEQVLLNLLKNAHESGSNPDEVTLSIRHQTMVD
HHHHHHHCCEEHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEC
GTGFSIKIEDCGSGMSEEVLEQALLPFYSTKQSGTGLGLPLCREIIEAHDGSISMHNRSD
CCCCEEEECCCCCCCHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCC
GGLSVHLWLPQ
CCEEEEEECCC
>Mature Secondary Structure
MQLRTKLIIYSTVCCALGVLLTLGVVSYRPTISPVEVAAPIKIPDITIPPLDVDKLQETV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHH
EAAIKNNEQLQQTLPLQERLRAEQIKHELQKLEQLKQEQLQIKLYKLEQLKDGLFSPSVH
HHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PEVPPIAPPAEPISLPKLKLEHEAESTPPITEWLFILLFSCGICALGVAWFTRHLARSLN
CCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ALEVGLLNFNDNDFSVSIPANGEGQLKALAELFNDSAAKLRQERQYIYQRELLLDKVIQS
HHEEEEEEECCCCEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
SPNVMLLFNDHQKLMYANDAARHLFHIKGKMEGLSLDELLQDLPEALALALKQEKSGLFT
CCCEEEEECCCCCEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
MGEDDTETWYLSRGQFLLNNQQHNLILLKQMTRELNRQEVAVWKKVIRIISHELNNSVAP
ECCCCCCEEEEECCEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IASMVNSGRLLTKDLDNPKLKLIFDTIESRTNHLSQFIFNYARFAKLPLPQRRDVPWQQL
HHHHHHCCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
IEHLTQHYPFTLANELPAEMGYFDQGQMEQVLLNLLKNAHESGSNPDEVTLSIRHQTMVD
HHHHHHHCCEEHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEC
GTGFSIKIEDCGSGMSEEVLEQALLPFYSTKQSGTGLGLPLCREIIEAHDGSISMHNRSD
CCCCEEEECCCCCCCHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCC
GGLSVHLWLPQ
CCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]