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The map label for this gene is exbD1 [H]

Identifier: 117921676

GI number: 117921676

Start: 3883339

End: 3883776

Strand: Direct

Name: exbD1 [H]

Synonym: Shewana3_3238

Alternate gene names: 117921676

Gene position: 3883339-3883776 (Clockwise)

Preceding gene: 117921675

Following gene: 117921677

Centisome position: 78.1

GC content: 49.77

Gene sequence:

>438_bases
ATGATCAGTGCCGATAGAGCCTCATTACCTCAAGCGGGGATCTCGGCCTTAGAGCCCCTTCCGAGCATCGATCTTACGGC
ACTGATTGACATTATTTTTATCGTCTTAGTGTTTCTATTGCTCACCGCTAATAGCCGTTTGATGAGTTTACCCGTGGAAG
TGCCGCAAAGCCCAAGCAGCGCCATCACGGCCGTCGAACCGAAAGAATCCATTGCTATCAATATTATGGCAAACGCTCCC
CATTGGGCGCTAAACAGCGAGACCTATTCCGAGTTAAACGCCTTCAGTTCGGCATTTGAAGAACAGCTAAAACGTCATCC
TCAGGCCAGTATTGTTATCGCGGCGGATAAAGCCGCGCCAGTAGAACCCTTAATGCAGCTGTTAGCGCTCTTGCAGGGCA
ATGCCATCAGCCAGACGCAGATTTTGATGGAGCATTAA

Upstream 100 bases:

>100_bases
CCGGGGTTGAACATATCGCCCTCGAGCAGAATCACTATCAGGCTTTTGCCGACGTTAATCGTGCTAAACCCGCGTCTAAC
ACTCAACTCGAGTCACAGCC

Downstream 100 bases:

>100_bases
TCGCTTAGGTTAAAGCAGAACATTTTTCGAAACCATTTCCCTTGGCAGTACCTTTTGCCTGCCTTGCACACAGATGAAGT
AGGAGTTTATCCATGTTGTT

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MISADRASLPQAGISALEPLPSIDLTALIDIIFIVLVFLLLTANSRLMSLPVEVPQSPSSAITAVEPKESIAINIMANAP
HWALNSETYSELNAFSSAFEEQLKRHPQASIVIAADKAAPVEPLMQLLALLQGNAISQTQILMEH

Sequences:

>Translated_145_residues
MISADRASLPQAGISALEPLPSIDLTALIDIIFIVLVFLLLTANSRLMSLPVEVPQSPSSAITAVEPKESIAINIMANAP
HWALNSETYSELNAFSSAFEEQLKRHPQASIVIAADKAAPVEPLMQLLALLQGNAISQTQILMEH
>Mature_145_residues
MISADRASLPQAGISALEPLPSIDLTALIDIIFIVLVFLLLTANSRLMSLPVEVPQSPSSAITAVEPKESIAINIMANAP
HWALNSETYSELNAFSSAFEEQLKRHPQASIVIAADKAAPVEPLMQLLALLQGNAISQTQILMEH

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15566; Mature: 15566

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISADRASLPQAGISALEPLPSIDLTALIDIIFIVLVFLLLTANSRLMSLPVEVPQSPSS
CCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCC
AITAVEPKESIAINIMANAPHWALNSETYSELNAFSSAFEEQLKRHPQASIVIAADKAAP
CEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
VEPLMQLLALLQGNAISQTQILMEH
HHHHHHHHHHHCCCCCCHHHHEECC
>Mature Secondary Structure
MISADRASLPQAGISALEPLPSIDLTALIDIIFIVLVFLLLTANSRLMSLPVEVPQSPSS
CCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCC
AITAVEPKESIAINIMANAPHWALNSETYSELNAFSSAFEEQLKRHPQASIVIAADKAAP
CEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
VEPLMQLLALLQGNAISQTQILMEH
HHHHHHHHHHHCCCCCCHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]