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The map label for this gene is ytrP [H]

Identifier: 117921595

GI number: 117921595

Start: 3786365

End: 3787627

Strand: Direct

Name: ytrP [H]

Synonym: Shewana3_3157

Alternate gene names: 117921595

Gene position: 3786365-3787627 (Clockwise)

Preceding gene: 117921594

Following gene: 117921601

Centisome position: 76.15

GC content: 45.29

Gene sequence:

>1263_bases
GTGAAATTAAGGGATAATTTTAAACGTAAAACCATAGACCGCTTGGACTATCGCTATCATCTATTGCTGCTGATAGTGCC
AATAGTATTATTCGTCTTACTGTTTGTGTTTAATGCTCCCACCGAAGGTTGGACTATTCTGCCGCTGCTGTTTGTCTGTC
TTATCTATGTGATTGCCTACAGCCTTATTTATTATCTTCACCAGGGTCGCTTAACCCGTCTATGGCAACACTTAGAGCAA
GTGGTGAGCATTAACGATGCTATTTATGAGCTTGCCCATCTATCGAGCCAGTATAAAAATGAACATGCGTTTCTCGATGC
ACTGCTGAATAAAGCCGTTTGCATCATTAACGGTGCCGAAATGGGTAGCATCATCAAAGTCAACGAAGAGACCCATAAAC
TGCACTTCGAATCCGTTGTTGGGCTCGATCTTAACATGCTCAAGCAATTGAATTTTTCCCTCGAGCAGTCCTTCGAATAT
CGGCTCACTAAGGGCAAATGCGACCGCGTGGTAGTAGTGGATGATATGAAAAACATCAATGCCGCCAGTACGCTCACCGG
TGAAGAGCAGCACATCTTGCTCACCGCGGCTAAGCAACCGATACGTTCTACACTCTCAAGCCCAATACGCATCGATGGCA
AACTCTATGGCATGCTTAATCTCGACAGTAGTAGTGTCGGTGCCTTTAGTGATTACGACCGCAACCTGGTCTCTATTCTC
ACCCATGAGGCCAGCAATGCGATTGCCCTGTACCAGAAGTCATTGCAAATCACTAAACTCGCCAACTTTGACAACTTAAC
CGGACTCTATAACCGTAAAAACTTCGAAGATGCCCTACAACATTGGCAACCTAAGGCTCATCTAGGCAGCTTTTTGGTGA
TTATCGATATGGATAATCTCAAGACCATTAATGATCAGCATGGGCATCAGGCTGGCGATATGGCCATTAAGCGAGTAGCT
AATACCATACTGAGTTATTGGAAGCATAAAGGCATTATCTCGCGCTTCGGGGGGGATGAGTTTGTCGCCCTCTGCCATGG
TCCATTAGAGCTGCTTGAAAGCGATTTGGATGCTATGCGCGTCAAGTTACACCAAGAGTCATCCTTAAATCTTAACTTCA
GCGTGGGTATAGCCGCATACGACAATGATTGGGCAAAATCATTTAAACTGGCAGACCAAGCTATGTATGAGCAAAAACGC
GGTAAGAAGAAAGCGGTAAAAGCACTCGAAGCGATTGCGGCCAATAACCAATTGGCGCAGTAG

Upstream 100 bases:

>100_bases
TTTTTATCTTCGTTATATACTTATCCATACTCAGCGTGAATGAGTTAGTGATGTAGTGATTAAAGCTGACTAACCGGAGC
ACGAACAAAGGAACTGCCGA

Downstream 100 bases:

>100_bases
TGGCATTAGGAGCTTATCAACCATAAGCTCCTAAACGCATAAATCTGTTACTAGCTGAAGAATAAGCGCCACAACCAAGA
AGAATCTAGATCCTCCTGAC

Product: diguanylate cyclase with GAF sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MKLRDNFKRKTIDRLDYRYHLLLLIVPIVLFVLLFVFNAPTEGWTILPLLFVCLIYVIAYSLIYYLHQGRLTRLWQHLEQ
VVSINDAIYELAHLSSQYKNEHAFLDALLNKAVCIINGAEMGSIIKVNEETHKLHFESVVGLDLNMLKQLNFSLEQSFEY
RLTKGKCDRVVVVDDMKNINAASTLTGEEQHILLTAAKQPIRSTLSSPIRIDGKLYGMLNLDSSSVGAFSDYDRNLVSIL
THEASNAIALYQKSLQITKLANFDNLTGLYNRKNFEDALQHWQPKAHLGSFLVIIDMDNLKTINDQHGHQAGDMAIKRVA
NTILSYWKHKGIISRFGGDEFVALCHGPLELLESDLDAMRVKLHQESSLNLNFSVGIAAYDNDWAKSFKLADQAMYEQKR
GKKKAVKALEAIAANNQLAQ

Sequences:

>Translated_420_residues
MKLRDNFKRKTIDRLDYRYHLLLLIVPIVLFVLLFVFNAPTEGWTILPLLFVCLIYVIAYSLIYYLHQGRLTRLWQHLEQ
VVSINDAIYELAHLSSQYKNEHAFLDALLNKAVCIINGAEMGSIIKVNEETHKLHFESVVGLDLNMLKQLNFSLEQSFEY
RLTKGKCDRVVVVDDMKNINAASTLTGEEQHILLTAAKQPIRSTLSSPIRIDGKLYGMLNLDSSSVGAFSDYDRNLVSIL
THEASNAIALYQKSLQITKLANFDNLTGLYNRKNFEDALQHWQPKAHLGSFLVIIDMDNLKTINDQHGHQAGDMAIKRVA
NTILSYWKHKGIISRFGGDEFVALCHGPLELLESDLDAMRVKLHQESSLNLNFSVGIAAYDNDWAKSFKLADQAMYEQKR
GKKKAVKALEAIAANNQLAQ
>Mature_420_residues
MKLRDNFKRKTIDRLDYRYHLLLLIVPIVLFVLLFVFNAPTEGWTILPLLFVCLIYVIAYSLIYYLHQGRLTRLWQHLEQ
VVSINDAIYELAHLSSQYKNEHAFLDALLNKAVCIINGAEMGSIIKVNEETHKLHFESVVGLDLNMLKQLNFSLEQSFEY
RLTKGKCDRVVVVDDMKNINAASTLTGEEQHILLTAAKQPIRSTLSSPIRIDGKLYGMLNLDSSSVGAFSDYDRNLVSIL
THEASNAIALYQKSLQITKLANFDNLTGLYNRKNFEDALQHWQPKAHLGSFLVIIDMDNLKTINDQHGHQAGDMAIKRVA
NTILSYWKHKGIISRFGGDEFVALCHGPLELLESDLDAMRVKLHQESSLNLNFSVGIAAYDNDWAKSFKLADQAMYEQKR
GKKKAVKALEAIAANNQLAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=185, Percent_Identity=29.1891891891892, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87081977, Length=233, Percent_Identity=30.4721030042918, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787541, Length=167, Percent_Identity=34.7305389221557, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787056, Length=151, Percent_Identity=33.112582781457, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI87081881, Length=193, Percent_Identity=29.5336787564767, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787802, Length=159, Percent_Identity=30.188679245283, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081974, Length=146, Percent_Identity=35.6164383561644, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082007, Length=177, Percent_Identity=32.2033898305085, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=26.5060240963855, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787262, Length=177, Percent_Identity=28.8135593220339, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788381, Length=175, Percent_Identity=29.7142857142857, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=27.7777777777778, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 47667; Mature: 47667

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRDNFKRKTIDRLDYRYHLLLLIVPIVLFVLLFVFNAPTEGWTILPLLFVCLIYVIAY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
SLIYYLHQGRLTRLWQHLEQVVSINDAIYELAHLSSQYKNEHAFLDALLNKAVCIINGAE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
MGSIIKVNEETHKLHFESVVGLDLNMLKQLNFSLEQSFEYRLTKGKCDRVVVVDDMKNIN
CCCEEEECCHHHHHHHHHHHCCCHHHHHHHCCHHHCCHHEEECCCCCCEEEEECCCCCCC
AASTLTGEEQHILLTAAKQPIRSTLSSPIRIDGKLYGMLNLDSSSVGAFSDYDRNLVSIL
CHHCCCCCCCEEEEEHHHHHHHHHCCCCEEECCEEEEEEECCCCCCCCCHHHHHHHHHHH
THEASNAIALYQKSLQITKLANFDNLTGLYNRKNFEDALQHWQPKAHLGSFLVIIDMDNL
HHCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCC
KTINDQHGHQAGDMAIKRVANTILSYWKHKGIISRFGGDEFVALCHGPLELLESDLDAMR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEECCHHHHHHHHHHHHH
VKLHQESSLNLNFSVGIAAYDNDWAKSFKLADQAMYEQKRGKKKAVKALEAIAANNQLAQ
HHHCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKLRDNFKRKTIDRLDYRYHLLLLIVPIVLFVLLFVFNAPTEGWTILPLLFVCLIYVIAY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
SLIYYLHQGRLTRLWQHLEQVVSINDAIYELAHLSSQYKNEHAFLDALLNKAVCIINGAE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
MGSIIKVNEETHKLHFESVVGLDLNMLKQLNFSLEQSFEYRLTKGKCDRVVVVDDMKNIN
CCCEEEECCHHHHHHHHHHHCCCHHHHHHHCCHHHCCHHEEECCCCCCEEEEECCCCCCC
AASTLTGEEQHILLTAAKQPIRSTLSSPIRIDGKLYGMLNLDSSSVGAFSDYDRNLVSIL
CHHCCCCCCCEEEEEHHHHHHHHHCCCCEEECCEEEEEEECCCCCCCCCHHHHHHHHHHH
THEASNAIALYQKSLQITKLANFDNLTGLYNRKNFEDALQHWQPKAHLGSFLVIIDMDNL
HHCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCC
KTINDQHGHQAGDMAIKRVANTILSYWKHKGIISRFGGDEFVALCHGPLELLESDLDAMR
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEECCHHHHHHHHHHHHH
VKLHQESSLNLNFSVGIAAYDNDWAKSFKLADQAMYEQKRGKKKAVKALEAIAANNQLAQ
HHHCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377 [H]