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The map label for this gene is rlpA [C]

Identifier: 117921542

GI number: 117921542

Start: 3723013

End: 3723408

Strand: Reverse

Name: rlpA [C]

Synonym: Shewana3_3104

Alternate gene names: 117921542

Gene position: 3723408-3723013 (Counterclockwise)

Preceding gene: 117921543

Following gene: 117921541

Centisome position: 74.88

GC content: 44.7

Gene sequence:

>396_bases
GTGAGTCTCAAATACTTATCTTTGACCTTAATGCTGCTAGCCACCTTGGCCTTATCGGGGTGTTCTTCTACCCATTCGGG
AAACTGGCAGGGGTTTACTGAATCTGGCCAAGCTTCTTTCTACGGCGATAAACATCAAAATAAGAAAACCGCCAGCGGTG
AGCGTTATAACCATAAATTAAAAACGGCTGCCCATAAGGAAATTCCTTTTGGTTCAGTAGTTAAAGTCACCAATCTTAAG
AACGGTAAAACGGTTGTGGTTAAGGTCAACGACAGGGGGCCTTTCGTGCGGGGCCGAATTATAGATTTGTCCAAATCCGC
ATTTAGCAGCATAGGCAATACCTCGGCGGGTTTACTGGATGTTAAAATTGAAGTGATTCAAGCCGCGAGTCAGTAA

Upstream 100 bases:

>100_bases
TAACCCTCTAATTAAATGGATAAAGTGGCGCAAGGGTGCCTCTTGGGGATTTTTGCTGTACATTGCTCGGATGATGAACT
CATTTGCTAAGGGATGTTCT

Downstream 100 bases:

>100_bases
TCGACTCTCAATGAGCTTGCCATGTGTGCTTTAACAAAACAGTATCGGTTCGAATGGTTTGAATAGTGCTTGGGTTTTAG
TATGTGCAGTAAAACTCAGG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MSLKYLSLTLMLLATLALSGCSSTHSGNWQGFTESGQASFYGDKHQNKKTASGERYNHKLKTAAHKEIPFGSVVKVTNLK
NGKTVVVKVNDRGPFVRGRIIDLSKSAFSSIGNTSAGLLDVKIEVIQAASQ

Sequences:

>Translated_131_residues
MSLKYLSLTLMLLATLALSGCSSTHSGNWQGFTESGQASFYGDKHQNKKTASGERYNHKLKTAAHKEIPFGSVVKVTNLK
NGKTVVVKVNDRGPFVRGRIIDLSKSAFSSIGNTSAGLLDVKIEVIQAASQ
>Mature_130_residues
SLKYLSLTLMLLATLALSGCSSTHSGNWQGFTESGQASFYGDKHQNKKTASGERYNHKLKTAAHKEIPFGSVVKVTNLKN
GKTVVVKVNDRGPFVRGRIIDLSKSAFSSIGNTSAGLLDVKIEVIQAASQ

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=84, Percent_Identity=41.6666666666667, Blast_Score=76, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 14085; Mature: 13954

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKYLSLTLMLLATLALSGCSSTHSGNWQGFTESGQASFYGDKHQNKKTASGERYNHKL
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH
KTAAHKEIPFGSVVKVTNLKNGKTVVVKVNDRGPFVRGRIIDLSKSAFSSIGNTSAGLLD
HHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCHHHHHHCCCCCCCEEE
VKIEVIQAASQ
EEEEEEECCCC
>Mature Secondary Structure 
SLKYLSLTLMLLATLALSGCSSTHSGNWQGFTESGQASFYGDKHQNKKTASGERYNHKL
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH
KTAAHKEIPFGSVVKVTNLKNGKTVVVKVNDRGPFVRGRIIDLSKSAFSSIGNTSAGLLD
HHHHHCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCHHHHHHCCCCCCCEEE
VKIEVIQAASQ
EEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]