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The map label for this gene is yrkO [H]

Identifier: 117921417

GI number: 117921417

Start: 3579205

End: 3580449

Strand: Direct

Name: yrkO [H]

Synonym: Shewana3_2978

Alternate gene names: 117921417

Gene position: 3579205-3580449 (Clockwise)

Preceding gene: 117921416

Following gene: 117921418

Centisome position: 71.98

GC content: 46.91

Gene sequence:

>1245_bases
ATGCCTGCTATCAAACCTATCACTCAAGCTGCCAAGGATCCTTGGGGAAATCCCATCGATGCGACTCACACGCTCCATCG
GCCTATCCCAATTGGACGTAACGCCAACCTCGATGCCATACGTGGGTTAGCGGTATTAGGGATATTTTTTATGAATATCT
ATTTTATGGGGATAAGCTTTTATGGCTATGCGCCCCATCAAATCCCATTGCTCTCAGACCAAGTGCTCGAAGCCTTTAGC
AATTTCTTTATTGAAGGGCGCTTTATCAGCCTGTTTTCCATCTTATTTGGTGTCGGGCTTTATATTCAGTACCAACGGTT
TAGCGATAAAGGTTTAGCGGCCTATTCGCTGCTGCTCTCACGCTTGAAATGGTTGATTGTCTTTGGCCTGATCCACGGCA
TCATTATCTGGCCCGGTGATATTTTACTGACCTATGGGATCAGCGGCTTTTTAGCACTCTGCTACCGAGATGCCAGCATC
GCCGAGTTAAAACGTAAGGCCAATATTTTTATTTTCAGTTCGTTAGTGGTTATCTGCTTAATCAGCATCATGGGCAGTGA
CGAACTCTTTACCCGCGAATCGCCCTTATTTGCCGAGCAATACAGCGCTTGGACATCGGGTTATGCCAATCAACTGTTCC
TGCATGTCATGCAGGTCGGTTACATGGCGCTGGTCATTCCCTTCACCTTAATGTGGTTCACGGGCGGACTGATGCTGCTC
GGAATGGCGCTCTATCGCCAAGGTAGCTTCGAGCAGGGGTTTGAGCGAAACACCTTAATCAAGCTGGTATTAGCCAGCTT
AGTTCTCTCTGCCCTAGATACCCTGCTGAGCTTAACTCAAAACCCGATACTGGTGATGTTTTCGGATATCATAGTCATGC
TAAGTGCTATCCCTACCGCACTGATTTACATCCATATATTGGTTAAAATCTGCCAAAATCGCTCGGCAGTGTTAAGGCCT
TTGCAAAATGTCGGCAAACTCGCCTTTAGCCTGTATATATTGCAATCCATTGTCGGTGTGTTTATCTTTCGCCACCTTGC
CCCCGAGTTAATATTAACCCTCGATAGGGGCGGTTATATGGCGATAGCGCTGGGTTACTCTCTGCTGCAATTGCTACTCG
CAGGTCTGTATTTACGCTACTTTAACCAAGGGCCACTCGAAAAACTCTGGCGCCAGCTCGCCTTTAAGTCCATCAACGCT
AGTAGCCATTTGAACTCGAACAATGAACAACAAAAGAGCCAGTAA

Upstream 100 bases:

>100_bases
CCCTAAGTATTCTTTCGAATGGTCGACTGTTAGGCTAACACTTGTATTATCAACTCAATCTCGCCGAGCAGACTCGGTTC
ATTTTCCCAATAGCAAAAGG

Downstream 100 bases:

>100_bases
AACACCTTCCGCTCCAGTACATGAACGAAGAGCGACTCAACAAAGAGTGAATCAGCGAAAAGCGAATAAATCTAGAGCTA
CAGAACCAAGAGTCGCGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MPAIKPITQAAKDPWGNPIDATHTLHRPIPIGRNANLDAIRGLAVLGIFFMNIYFMGISFYGYAPHQIPLLSDQVLEAFS
NFFIEGRFISLFSILFGVGLYIQYQRFSDKGLAAYSLLLSRLKWLIVFGLIHGIIIWPGDILLTYGISGFLALCYRDASI
AELKRKANIFIFSSLVVICLISIMGSDELFTRESPLFAEQYSAWTSGYANQLFLHVMQVGYMALVIPFTLMWFTGGLMLL
GMALYRQGSFEQGFERNTLIKLVLASLVLSALDTLLSLTQNPILVMFSDIIVMLSAIPTALIYIHILVKICQNRSAVLRP
LQNVGKLAFSLYILQSIVGVFIFRHLAPELILTLDRGGYMAIALGYSLLQLLLAGLYLRYFNQGPLEKLWRQLAFKSINA
SSHLNSNNEQQKSQ

Sequences:

>Translated_414_residues
MPAIKPITQAAKDPWGNPIDATHTLHRPIPIGRNANLDAIRGLAVLGIFFMNIYFMGISFYGYAPHQIPLLSDQVLEAFS
NFFIEGRFISLFSILFGVGLYIQYQRFSDKGLAAYSLLLSRLKWLIVFGLIHGIIIWPGDILLTYGISGFLALCYRDASI
AELKRKANIFIFSSLVVICLISIMGSDELFTRESPLFAEQYSAWTSGYANQLFLHVMQVGYMALVIPFTLMWFTGGLMLL
GMALYRQGSFEQGFERNTLIKLVLASLVLSALDTLLSLTQNPILVMFSDIIVMLSAIPTALIYIHILVKICQNRSAVLRP
LQNVGKLAFSLYILQSIVGVFIFRHLAPELILTLDRGGYMAIALGYSLLQLLLAGLYLRYFNQGPLEKLWRQLAFKSINA
SSHLNSNNEQQKSQ
>Mature_413_residues
PAIKPITQAAKDPWGNPIDATHTLHRPIPIGRNANLDAIRGLAVLGIFFMNIYFMGISFYGYAPHQIPLLSDQVLEAFSN
FFIEGRFISLFSILFGVGLYIQYQRFSDKGLAAYSLLLSRLKWLIVFGLIHGIIIWPGDILLTYGISGFLALCYRDASIA
ELKRKANIFIFSSLVVICLISIMGSDELFTRESPLFAEQYSAWTSGYANQLFLHVMQVGYMALVIPFTLMWFTGGLMLLG
MALYRQGSFEQGFERNTLIKLVLASLVLSALDTLLSLTQNPILVMFSDIIVMLSAIPTALIYIHILVKICQNRSAVLRPL
QNVGKLAFSLYILQSIVGVFIFRHLAPELILTLDRGGYMAIALGYSLLQLLLAGLYLRYFNQGPLEKLWRQLAFKSINAS
SHLNSNNEQQKSQ

Specific function: Involved in transport (Potential) [H]

COG id: COG2311

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788475, Length=387, Percent_Identity=28.4237726098191, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007349 [H]

Pfam domain/function: PF04235 DUF418 [H]

EC number: NA

Molecular weight: Translated: 46429; Mature: 46298

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAIKPITQAAKDPWGNPIDATHTLHRPIPIGRNANLDAIRGLAVLGIFFMNIYFMGISF
CCCCCHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
YGYAPHQIPLLSDQVLEAFSNFFIEGRFISLFSILFGVGLYIQYQRFSDKGLAAYSLLLS
CCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHH
RLKWLIVFGLIHGIIIWPGDILLTYGISGFLALCYRDASIAELKRKANIFIFSSLVVICL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHH
ISIMGSDELFTRESPLFAEQYSAWTSGYANQLFLHVMQVGYMALVIPFTLMWFTGGLMLL
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMALYRQGSFEQGFERNTLIKLVLASLVLSALDTLLSLTQNPILVMFSDIIVMLSAIPTA
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LIYIHILVKICQNRSAVLRPLQNVGKLAFSLYILQSIVGVFIFRHLAPELILTLDRGGYM
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCH
AIALGYSLLQLLLAGLYLRYFNQGPLEKLWRQLAFKSINASSHLNSNNEQQKSQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCHHHCCC
>Mature Secondary Structure 
PAIKPITQAAKDPWGNPIDATHTLHRPIPIGRNANLDAIRGLAVLGIFFMNIYFMGISF
CCCCHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]