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The map label for this gene is tdcF [C]

Identifier: 117921410

GI number: 117921410

Start: 3572238

End: 3572621

Strand: Direct

Name: tdcF [C]

Synonym: Shewana3_2971

Alternate gene names: 117921410

Gene position: 3572238-3572621 (Clockwise)

Preceding gene: 117921404

Following gene: 117921411

Centisome position: 71.84

GC content: 47.92

Gene sequence:

>384_bases
ATGAAAAGCATCATTCATGCAGAACGTGCCCCAGCAGCGATTGGCCCTTATTCCCACGGCACGAGTTATGGCAACCTGAT
TTTTACCTCTGGACAACTGCCTGTATGTAAAGAGAAAGGTGGCGTTGTCGAGGGTGGGATCAGCGAACAATCTGTGCAAT
GCCTTGAGAATCTGAAATACGTGATTGAAGCTGGTGGTGGCAGCCTAGAAACCGTGCTTAAAACCACCTGTTACTTGAGT
GAGATCAGTGACTTTGCCGCCTTTAATGAAGTCTATAAAACCTATTTCAAAACCGACTGCCCTGCCCGCAGCTGTTTTGC
GGTAAAAGATCTTCCACTGGGTGTCAAAGTGGAAGTTGAAGCCATCGCCCACGTTCACGCATAA

Upstream 100 bases:

>100_bases
TGAAACATTAAAAAATAATTGCAACCAAACCAAAATATGCAAATAATATTGCACATAGAAATTCGACAGCATTCAATTTT
ATTTGCAGATTGGAGAGATA

Downstream 100 bases:

>100_bases
ATTGGTAAGGTTGTAGCCCGATGAAACCTCTATGGCAGCAATACATTCAGATCATTAACCAAGTGGTTAAACCCGCCTTA
GGCTGTACCGAGCCGATCGC

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MKSIIHAERAPAAIGPYSHGTSYGNLIFTSGQLPVCKEKGGVVEGGISEQSVQCLENLKYVIEAGGGSLETVLKTTCYLS
EISDFAAFNEVYKTYFKTDCPARSCFAVKDLPLGVKVEVEAIAHVHA

Sequences:

>Translated_127_residues
MKSIIHAERAPAAIGPYSHGTSYGNLIFTSGQLPVCKEKGGVVEGGISEQSVQCLENLKYVIEAGGGSLETVLKTTCYLS
EISDFAAFNEVYKTYFKTDCPARSCFAVKDLPLGVKVEVEAIAHVHA
>Mature_127_residues
MKSIIHAERAPAAIGPYSHGTSYGNLIFTSGQLPVCKEKGGVVEGGISEQSVQCLENLKYVIEAGGGSLETVLKTTCYLS
EISDFAAFNEVYKTYFKTDCPARSCFAVKDLPLGVKVEVEAIAHVHA

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=39.8373983739837, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI87082213, Length=126, Percent_Identity=44.4444444444444, Blast_Score=119, Evalue=5e-29,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=44.4444444444444, Blast_Score=112, Evalue=6e-27,
Organism=Escherichia coli, GI1787245, Length=124, Percent_Identity=28.2258064516129, Blast_Score=67, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=46.7213114754098, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=46.7213114754098, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=46.7213114754098, Blast_Score=107, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=51, Blast_Score=106, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6322138, Length=114, Percent_Identity=38.5964912280702, Blast_Score=97, Evalue=1e-21,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=38.2113821138211, Blast_Score=99, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13602; Mature: 13602

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIIHAERAPAAIGPYSHGTSYGNLIFTSGQLPVCKEKGGVVEGGISEQSVQCLENLKY
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHH
VIEAGGGSLETVLKTTCYLSEISDFAAFNEVYKTYFKTDCPARSCFAVKDLPLGVKVEVE
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEHH
AIAHVHA
HHHEECC
>Mature Secondary Structure
MKSIIHAERAPAAIGPYSHGTSYGNLIFTSGQLPVCKEKGGVVEGGISEQSVQCLENLKY
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHHHH
VIEAGGGSLETVLKTTCYLSEISDFAAFNEVYKTYFKTDCPARSCFAVKDLPLGVKVEVE
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCEEEHH
AIAHVHA
HHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]