Click here to switch to the map view.

The map label for this gene is yeiR [H]

Identifier: 117921367

GI number: 117921367

Start: 3507880

End: 3508992

Strand: Reverse

Name: yeiR [H]

Synonym: Shewana3_2927

Alternate gene names: 117921367

Gene position: 3508992-3507880 (Counterclockwise)

Preceding gene: 117921368

Following gene: 117921365

Centisome position: 70.57

GC content: 49.96

Gene sequence:

>1113_bases
ATGAGAGTGCCGTCCATGATAATCAAAGCCATTCCCACCAATATCATCACAGGTTTTTTAGGCGTCGGTAAAACTAGCCT
GATTAAACAGCTCCTTAAGACCAAACCCGAAGGTGAAACTTGGGCGGTATTAGTGAATGAGTTTGGCGAAGTTGGGATTG
ATGCTGGGTTGATGGATGCCAGCGACAGCGGCGTGCAAATTCGTGAGGTGGCGGGGGGCTGCATGTGCTGCGCTGCAGGT
GTGCCGACTCAAGTGGCCATTAATCAACTGATCGCCCGGGCTAAGCCCGACAGATTACTGATTGAGCCAACGGGGCTTGG
GCATCCCAATGAAATTATCAAAGTGCTCAGTGCGCCCCATTATCACAATGTTATCAGGTTGCAGAGCACCCTATGCCTTA
TCGATGCCCGCAAATTACGGGATGAGCGCTATCGTGGACATGACAATTTTATCCAGCAGTTGCACGTCGCCGATGTGATA
GTCACAACGAAAACCGATTTGTACCCCGAGTTTGAAGCGGCAGAGGGCGGCCACTTGGCGGACGACTTAAGTCAATATCT
GAATGAGTTACAGCTGAGTGATACTCGCGTGATTGAACACAATACGTCACAGGGATTATCCGAAACTTTGATAGGCAGCC
TTAAACAGTCACGTCGTCAAAAGGCATCGATGGGAAAATCCGCCGTTTTTACACCAGTGGCAGCATCTACAAGTCTTTTG
CGTAAAAGTGGCGACAGCTTAGGAGCACAGGGCGTTTTTGCCGAGGGCGCGAGCGAGCAAGCATTTAAGTTTGATGCGCG
CGGCCTAGTGCGTAAACACAATCAGGGCGAAGGCTGTTTTAGCTGCGGCTGGGTTATTGAGCCAATGCAAGAGTTTGATT
TTGATAAACTCATGCAGTTTATCTCGGCACAGACTCAAGGCCATTCTGCACTTTTGCGGTTAAAAGCGGTGATGATCACC
AGCGATGGTATTGCCGGGATCAATTGGAGTGATGGCGATATGGCGGTGACTGAGCTGGACGATAGCCTAGATTCACGCTT
AGAAATGATCTCGACCCAAGCGCTAAATTGGGATGAGATTGAGCAAGGTTTGTTGGGGTGCTTAGCGCGCTAG

Upstream 100 bases:

>100_bases
CTTCCACTTATCCATTTATCAGCGCGCCATTGGCGCGCTTTTTGTTGAGCTTTTACGGGATAATCCCTACACTCGAGTGC
CCTCAATTCTGTTCGTTGCC

Downstream 100 bases:

>100_bases
GCTAAGTGAGCCAGTTAATCTGAAGTTGGGAGTCGTGTTACTCGGTCAGCATAGTATCTGGGATAGACACGCCTCTTGCC
TTCGCGAGGTTCGCTAATTC

Product: cobalamin synthesis protein, P47K

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MRVPSMIIKAIPTNIITGFLGVGKTSLIKQLLKTKPEGETWAVLVNEFGEVGIDAGLMDASDSGVQIREVAGGCMCCAAG
VPTQVAINQLIARAKPDRLLIEPTGLGHPNEIIKVLSAPHYHNVIRLQSTLCLIDARKLRDERYRGHDNFIQQLHVADVI
VTTKTDLYPEFEAAEGGHLADDLSQYLNELQLSDTRVIEHNTSQGLSETLIGSLKQSRRQKASMGKSAVFTPVAASTSLL
RKSGDSLGAQGVFAEGASEQAFKFDARGLVRKHNQGEGCFSCGWVIEPMQEFDFDKLMQFISAQTQGHSALLRLKAVMIT
SDGIAGINWSDGDMAVTELDDSLDSRLEMISTQALNWDEIEQGLLGCLAR

Sequences:

>Translated_370_residues
MRVPSMIIKAIPTNIITGFLGVGKTSLIKQLLKTKPEGETWAVLVNEFGEVGIDAGLMDASDSGVQIREVAGGCMCCAAG
VPTQVAINQLIARAKPDRLLIEPTGLGHPNEIIKVLSAPHYHNVIRLQSTLCLIDARKLRDERYRGHDNFIQQLHVADVI
VTTKTDLYPEFEAAEGGHLADDLSQYLNELQLSDTRVIEHNTSQGLSETLIGSLKQSRRQKASMGKSAVFTPVAASTSLL
RKSGDSLGAQGVFAEGASEQAFKFDARGLVRKHNQGEGCFSCGWVIEPMQEFDFDKLMQFISAQTQGHSALLRLKAVMIT
SDGIAGINWSDGDMAVTELDDSLDSRLEMISTQALNWDEIEQGLLGCLAR
>Mature_370_residues
MRVPSMIIKAIPTNIITGFLGVGKTSLIKQLLKTKPEGETWAVLVNEFGEVGIDAGLMDASDSGVQIREVAGGCMCCAAG
VPTQVAINQLIARAKPDRLLIEPTGLGHPNEIIKVLSAPHYHNVIRLQSTLCLIDARKLRDERYRGHDNFIQQLHVADVI
VTTKTDLYPEFEAAEGGHLADDLSQYLNELQLSDTRVIEHNTSQGLSETLIGSLKQSRRQKASMGKSAVFTPVAASTSLL
RKSGDSLGAQGVFAEGASEQAFKFDARGLVRKHNQGEGCFSCGWVIEPMQEFDFDKLMQFISAQTQGHSALLRLKAVMIT
SDGIAGINWSDGDMAVTELDDSLDSRLEMISTQALNWDEIEQGLLGCLAR

Specific function: Unknown

COG id: COG0523

COG function: function code R; Putative GTPases (G3E family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cobW C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI126722884, Length=170, Percent_Identity=32.9411764705882, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI223941779, Length=170, Percent_Identity=32.9411764705882, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI33469141, Length=170, Percent_Identity=32.9411764705882, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI146231952, Length=170, Percent_Identity=32.3529411764706, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI148727351, Length=170, Percent_Identity=32.3529411764706, Blast_Score=70, Evalue=3e-12,
Organism=Escherichia coli, GI1788499, Length=355, Percent_Identity=37.7464788732394, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI87082430, Length=174, Percent_Identity=33.9080459770115, Blast_Score=75, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR011629 [H]

Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]

EC number: NA

Molecular weight: Translated: 40251; Mature: 40251

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVPSMIIKAIPTNIITGFLGVGKTSLIKQLLKTKPEGETWAVLVNEFGEVGIDAGLMDA
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEHEEHHHHHCCCCCCCCCC
SDSGVQIREVAGGCMCCAAGVPTQVAINQLIARAKPDRLLIEPTGLGHPNEIIKVLSAPH
CCCCCCHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCC
YHNVIRLQSTLCLIDARKLRDERYRGHDNFIQQLHVADVIVTTKTDLYPEFEAAEGGHLA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCH
DDLSQYLNELQLSDTRVIEHNTSQGLSETLIGSLKQSRRQKASMGKSAVFTPVAASTSLL
HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHH
RKSGDSLGAQGVFAEGASEQAFKFDARGLVRKHNQGEGCFSCGWVIEPMQEFDFDKLMQF
HHCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCEECCHHHCCHHHHHHH
ISAQTQGHSALLRLKAVMITSDGIAGINWSDGDMAVTELDDSLDSRLEMISTQALNWDEI
HHHCCCCHHHHHHHHHHEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHH
EQGLLGCLAR
HHHHHHHHCC
>Mature Secondary Structure
MRVPSMIIKAIPTNIITGFLGVGKTSLIKQLLKTKPEGETWAVLVNEFGEVGIDAGLMDA
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEHEEHHHHHCCCCCCCCCC
SDSGVQIREVAGGCMCCAAGVPTQVAINQLIARAKPDRLLIEPTGLGHPNEIIKVLSAPH
CCCCCCHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCC
YHNVIRLQSTLCLIDARKLRDERYRGHDNFIQQLHVADVIVTTKTDLYPEFEAAEGGHLA
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCH
DDLSQYLNELQLSDTRVIEHNTSQGLSETLIGSLKQSRRQKASMGKSAVFTPVAASTSLL
HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHH
RKSGDSLGAQGVFAEGASEQAFKFDARGLVRKHNQGEGCFSCGWVIEPMQEFDFDKLMQF
HHCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCEECCHHHCCHHHHHHH
ISAQTQGHSALLRLKAVMITSDGIAGINWSDGDMAVTELDDSLDSRLEMISTQALNWDEI
HHHCCCCHHHHHHHHHHEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCHHHH
EQGLLGCLAR
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]