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The map label for this gene is yrrC [H]

Identifier: 117921359

GI number: 117921359

Start: 3495433

End: 3497598

Strand: Direct

Name: yrrC [H]

Synonym: Shewana3_2919

Alternate gene names: 117921359

Gene position: 3495433-3497598 (Clockwise)

Preceding gene: 117921358

Following gene: 117921360

Centisome position: 70.3

GC content: 46.58

Gene sequence:

>2166_bases
ATGAATACCGCTTTGCATGAAGACCAAATGCGTGTAACCAGTATTCCCTATCGCTCGACCAAGATGGTGATATTCAGCGG
TGTGCCGCTGGCCAAAGACTCTTACAAAACCAATAGTGGGAAGTATTTCGTCACCATCAAAGCCGACCCCGATAGCATCC
CAGTGCTTCCAACGCTGGGTCAGCATTGGTCAGTCAAAGGTGCTCGCCAGATAGAAAGTGTGGAGATGGGTGATTATGTA
ATGCAGCAGCACACTTATGAATCACCCAAGCATATTGAATGCACTTTACCCGAAACAGGTGAGCAACTGATACGCTTTAT
CGCCAGAGAAAGTGACTTCAAGGGTATTGGTGAAAGCAAAGCCAGGGCGCTCTGGCAGCTCTTGGGTAAAGACTTCCATG
CCACACTGAAAAATGACACCCCAGAGTCCAGAAAGCGTCTGACATCGATTCTGAGTGAAGATTCAGTGGAAGCGCTCTTT
AAGGGGTACGCCAAATATAAAAACCTGGCACATTGCAACTGGATGAGCGAGCACAACATCCCCGCCAGTGTGCAGCAACG
GCTGCTCAAGCATCACGGTGAAGCCTCCATAGAGGTAATTAAGGATAATCCTTATGCTTTGATGGGCTTTGGTCTTTCGT
TCAGTGCCATTGAAGATATTATCAAGGTAACGGATTTTAAGAGCTATGTTGCGAAGGATGACCCAAGAAGGCTCAGCGCT
GCTCTGGAAATGGCGATTCGCAAGGAGATTGAAAAAGGTCACACCTATACCACTCATGCCAATGTGCGCCCTTACCTCAA
CAATCTACTGAAAGACAAAACACTGGTCACTCAGGCATTCAAATCAGGTCATGATAAAGCTCAGTATATTTTAAATCCCG
ACACAGGAGCCTACCATCCAACGGCGCAACTTCTGATGGAAAGTGTCGTTGCCAAACGGCTAAATACACTGATTAAGCGA
AATGACTTGTTTGATGAAAACGCCAATGCTGCGTATTGCTCTGCGGTTGCGGAGCTTCCCTACGAATTAACTCCTAAACA
AATCGAAGCCGTCACAACGTGTCTGGATAATTCGGTAAGCTGTATTACGGGCGGTGCAGGAACAGGCAAGACAACGGTAC
TCAGAACGGCTCTCAGGGCATATCATCAACTTGGATTTGAAATACACGCCGTTGCGCTCAGCGGTCGTGCTGCAATGAGA
CTTCATGAGTCCATCGGTTTTGTTACCTCAACCATTGCCAAATTGCTGCGTGAAGCCCCCATAGAACCCTGTGTCGAGAA
AACAAATCACCTACTGGTGATTGATGAGGCAAGCATGATTGACTTGCCAACCATGTATCGTCTTGTGAATCACATTCACC
CCTCTGTACGATTAATATTCACTGGCGACCCCGACCAACTTCCACCAATCGGCTGCGGCAAGGTGTTGGCAGACATCGTT
GAAGCAAAAACGGTGGCTAATACGATGTTAGATATCGTCAAGAGACAGGAAGGTTCAACGGGTATCCCCGAATACTCAAA
GCTCATCAATCAAGGTGTGATGCCTGATCGATTAAGTACGGGAGCAATACACTTTCACGAAACCAGTAAAACAGACATTG
CCAAAGTCTGTTGTGAGCTTTACCAACAGTGTCCTGAAAACAGTCGCGTCATGGCTCCAACCAAGGCACTCGTATCAGAA
ATCAATAAACTTACCCAACAAGCCGTTAACCCAGATAGCACTAGCCTTGAGTTCGAAATCAATGGTGATAAGTTCTTTTT
GCCACTTCGCATGAATGATGCGGTGTTATTCACGCAGAACCATTATGACAAAGGCATTCAGAACGGCTCACTTGGTATGC
TAACCAACGCCAAACCTTCTGGTGATAGTTACGGTGAAGTGACGCTAGATACAGGTGAAAAGGTCGAGATAACACAATCC
GTTCTCGACTGCATGGAGTTGGGTTACGCAATCACCCTACATAAAGCTCAAGGGTCACAGTTTCCACGCATCATCATCGC
TCTGCAAAACGGAAGAATAGTTGATAGAGCATGGTTCTATACGGCAATCACGAGAGCTGAAAGTGAAATCCATATCGTTG
GTAGTAGTGATGACATGAAGCAGATCACCGAGGCACCTAGTCACTCTCATAAGCGGAATAGCTATCTGAAAGAACTGTTG
AGTTAG

Upstream 100 bases:

>100_bases
AGAATATTGAATTGAAAGCCAAGGTTAAGGAGCTTGAAAAGCGACTTGAGCGCTTTGGTGAGCTATCCGAAACCTTATCC
GAAATGGGGTTGATGCCACG

Downstream 100 bases:

>100_bases
CTATTAACCCTGTACATCAAACTCGTTTAGTGCCCCATTCCTCGTTAGCAAAGTGGCATTTAGCTCACTTCAGCATCAGT
ATGTTGACCAAATTTTAGTA

Product: DNA helicase/exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 721; Mature: 721

Protein sequence:

>721_residues
MNTALHEDQMRVTSIPYRSTKMVIFSGVPLAKDSYKTNSGKYFVTIKADPDSIPVLPTLGQHWSVKGARQIESVEMGDYV
MQQHTYESPKHIECTLPETGEQLIRFIARESDFKGIGESKARALWQLLGKDFHATLKNDTPESRKRLTSILSEDSVEALF
KGYAKYKNLAHCNWMSEHNIPASVQQRLLKHHGEASIEVIKDNPYALMGFGLSFSAIEDIIKVTDFKSYVAKDDPRRLSA
ALEMAIRKEIEKGHTYTTHANVRPYLNNLLKDKTLVTQAFKSGHDKAQYILNPDTGAYHPTAQLLMESVVAKRLNTLIKR
NDLFDENANAAYCSAVAELPYELTPKQIEAVTTCLDNSVSCITGGAGTGKTTVLRTALRAYHQLGFEIHAVALSGRAAMR
LHESIGFVTSTIAKLLREAPIEPCVEKTNHLLVIDEASMIDLPTMYRLVNHIHPSVRLIFTGDPDQLPPIGCGKVLADIV
EAKTVANTMLDIVKRQEGSTGIPEYSKLINQGVMPDRLSTGAIHFHETSKTDIAKVCCELYQQCPENSRVMAPTKALVSE
INKLTQQAVNPDSTSLEFEINGDKFFLPLRMNDAVLFTQNHYDKGIQNGSLGMLTNAKPSGDSYGEVTLDTGEKVEITQS
VLDCMELGYAITLHKAQGSQFPRIIIALQNGRIVDRAWFYTAITRAESEIHIVGSSDDMKQITEAPSHSHKRNSYLKELL
S

Sequences:

>Translated_721_residues
MNTALHEDQMRVTSIPYRSTKMVIFSGVPLAKDSYKTNSGKYFVTIKADPDSIPVLPTLGQHWSVKGARQIESVEMGDYV
MQQHTYESPKHIECTLPETGEQLIRFIARESDFKGIGESKARALWQLLGKDFHATLKNDTPESRKRLTSILSEDSVEALF
KGYAKYKNLAHCNWMSEHNIPASVQQRLLKHHGEASIEVIKDNPYALMGFGLSFSAIEDIIKVTDFKSYVAKDDPRRLSA
ALEMAIRKEIEKGHTYTTHANVRPYLNNLLKDKTLVTQAFKSGHDKAQYILNPDTGAYHPTAQLLMESVVAKRLNTLIKR
NDLFDENANAAYCSAVAELPYELTPKQIEAVTTCLDNSVSCITGGAGTGKTTVLRTALRAYHQLGFEIHAVALSGRAAMR
LHESIGFVTSTIAKLLREAPIEPCVEKTNHLLVIDEASMIDLPTMYRLVNHIHPSVRLIFTGDPDQLPPIGCGKVLADIV
EAKTVANTMLDIVKRQEGSTGIPEYSKLINQGVMPDRLSTGAIHFHETSKTDIAKVCCELYQQCPENSRVMAPTKALVSE
INKLTQQAVNPDSTSLEFEINGDKFFLPLRMNDAVLFTQNHYDKGIQNGSLGMLTNAKPSGDSYGEVTLDTGEKVEITQS
VLDCMELGYAITLHKAQGSQFPRIIIALQNGRIVDRAWFYTAITRAESEIHIVGSSDDMKQITEAPSHSHKRNSYLKELL
S
>Mature_721_residues
MNTALHEDQMRVTSIPYRSTKMVIFSGVPLAKDSYKTNSGKYFVTIKADPDSIPVLPTLGQHWSVKGARQIESVEMGDYV
MQQHTYESPKHIECTLPETGEQLIRFIARESDFKGIGESKARALWQLLGKDFHATLKNDTPESRKRLTSILSEDSVEALF
KGYAKYKNLAHCNWMSEHNIPASVQQRLLKHHGEASIEVIKDNPYALMGFGLSFSAIEDIIKVTDFKSYVAKDDPRRLSA
ALEMAIRKEIEKGHTYTTHANVRPYLNNLLKDKTLVTQAFKSGHDKAQYILNPDTGAYHPTAQLLMESVVAKRLNTLIKR
NDLFDENANAAYCSAVAELPYELTPKQIEAVTTCLDNSVSCITGGAGTGKTTVLRTALRAYHQLGFEIHAVALSGRAAMR
LHESIGFVTSTIAKLLREAPIEPCVEKTNHLLVIDEASMIDLPTMYRLVNHIHPSVRLIFTGDPDQLPPIGCGKVLADIV
EAKTVANTMLDIVKRQEGSTGIPEYSKLINQGVMPDRLSTGAIHFHETSKTDIAKVCCELYQQCPENSRVMAPTKALVSE
INKLTQQAVNPDSTSLEFEINGDKFFLPLRMNDAVLFTQNHYDKGIQNGSLGMLTNAKPSGDSYGEVTLDTGEKVEITQS
VLDCMELGYAITLHKAQGSQFPRIIIALQNGRIVDRAWFYTAITRAESEIHIVGSSDDMKQITEAPSHSHKRNSYLKELL
S

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=122, Percent_Identity=35.2459016393443, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 80168; Mature: 80168

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTALHEDQMRVTSIPYRSTKMVIFSGVPLAKDSYKTNSGKYFVTIKADPDSIPVLPTLG
CCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCC
QHWSVKGARQIESVEMGDYVMQQHTYESPKHIECTLPETGEQLIRFIARESDFKGIGESK
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCHHH
ARALWQLLGKDFHATLKNDTPESRKRLTSILSEDSVEALFKGYAKYKNLAHCNWMSEHNI
HHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PASVQQRLLKHHGEASIEVIKDNPYALMGFGLSFSAIEDIIKVTDFKSYVAKDDPRRLSA
CHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
ALEMAIRKEIEKGHTYTTHANVRPYLNNLLKDKTLVTQAFKSGHDKAQYILNPDTGAYHP
HHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCH
TAQLLMESVVAKRLNTLIKRNDLFDENANAAYCSAVAELPYELTPKQIEAVTTCLDNSVS
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCE
CITGGAGTGKTTVLRTALRAYHQLGFEIHAVALSGRAAMRLHESIGFVTSTIAKLLREAP
EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC
IEPCVEKTNHLLVIDEASMIDLPTMYRLVNHIHPSVRLIFTGDPDQLPPIGCGKVLADIV
CCHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHH
EAKTVANTMLDIVKRQEGSTGIPEYSKLINQGVMPDRLSTGAIHFHETSKTDIAKVCCEL
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHH
YQQCPENSRVMAPTKALVSEINKLTQQAVNPDSTSLEFEINGDKFFLPLRMNDAVLFTQN
HHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCCEEEEECC
HYDKGIQNGSLGMLTNAKPSGDSYGEVTLDTGEKVEITQSVLDCMELGYAITLHKAQGSQ
CHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEEECCCCC
FPRIIIALQNGRIVDRAWFYTAITRAESEIHIVGSSDDMKQITEAPSHSHKRNSYLKELL
CCEEEEEEECCEEEHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHH
S
C
>Mature Secondary Structure
MNTALHEDQMRVTSIPYRSTKMVIFSGVPLAKDSYKTNSGKYFVTIKADPDSIPVLPTLG
CCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCC
QHWSVKGARQIESVEMGDYVMQQHTYESPKHIECTLPETGEQLIRFIARESDFKGIGESK
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCHHH
ARALWQLLGKDFHATLKNDTPESRKRLTSILSEDSVEALFKGYAKYKNLAHCNWMSEHNI
HHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PASVQQRLLKHHGEASIEVIKDNPYALMGFGLSFSAIEDIIKVTDFKSYVAKDDPRRLSA
CHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
ALEMAIRKEIEKGHTYTTHANVRPYLNNLLKDKTLVTQAFKSGHDKAQYILNPDTGAYHP
HHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCH
TAQLLMESVVAKRLNTLIKRNDLFDENANAAYCSAVAELPYELTPKQIEAVTTCLDNSVS
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCE
CITGGAGTGKTTVLRTALRAYHQLGFEIHAVALSGRAAMRLHESIGFVTSTIAKLLREAP
EEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC
IEPCVEKTNHLLVIDEASMIDLPTMYRLVNHIHPSVRLIFTGDPDQLPPIGCGKVLADIV
CCHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHH
EAKTVANTMLDIVKRQEGSTGIPEYSKLINQGVMPDRLSTGAIHFHETSKTDIAKVCCEL
HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHH
YQQCPENSRVMAPTKALVSEINKLTQQAVNPDSTSLEFEINGDKFFLPLRMNDAVLFTQN
HHHCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEECCCEEEEECC
HYDKGIQNGSLGMLTNAKPSGDSYGEVTLDTGEKVEITQSVLDCMELGYAITLHKAQGSQ
CHHCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEEECCCCC
FPRIIIALQNGRIVDRAWFYTAITRAESEIHIVGSSDDMKQITEAPSHSHKRNSYLKELL
CCEEEEEEECCEEEHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHHHHH
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]