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The map label for this gene is ydiK [H]

Identifier: 117921351

GI number: 117921351

Start: 3484779

End: 3485888

Strand: Direct

Name: ydiK [H]

Synonym: Shewana3_2910

Alternate gene names: 117921351

Gene position: 3484779-3485888 (Clockwise)

Preceding gene: 117921349

Following gene: 117921352

Centisome position: 70.09

GC content: 48.38

Gene sequence:

>1110_bases
ATGGAAAACAACGAACTAATCGCGGTTGAAAATCGAATCGTCACTAAATTTATGGACATGTTTATCAAGTTTGGCATGCT
CCTCGCGCTAGCGTCCTTCTGCTACACCATCTTCTCCCCGTTTTTAAATATCATGCTCTGGGCAGTGATTTTAGCCGTGG
TCATTTATCCCTTTCACCAGCGTATCGCTAAACGGCTGAGTGATAAGCAAGGTCGAGCCGCTACTTTGTTGATTGTAATA
GGGTTAATGATATTAGTTTTACCTACCATTATGATGGTTAGCTCCATGACCGATAATATGGGTAGCTTGGTTGAGCGCGT
GAATCAGAATACCCTTGAGGTCCCAACCCCAAAGGAAAGCATTGCCAATATTCCCTTTGTTGGCGCTAAAATTTATGACT
TTTGGCTGAAAGCATCGACCGATTTACCCTCGTTAGTCAAAAGCTTACAACCGCACTTGGGGGATGCTGCCAAGCAAGTC
ATTCATGCGTTAGCCAGCATCAGTGCCAGTCTGTTGATGAGTATGTTTTCCTTCATTATCGCAGGCATCATGATGGCCTA
TGGCCACGCCGGTGCACAAAGTTCGGCTCGTATTGCCACTCGGATTGCTGGTCCTGAGCGCGGCGCAAAACTGGTCAATA
TCTGCTCTTCAACCATTCGTGCTGTCGCCTTAGGCGTTATTGGTGTGGCCTTCATTCAAGCCTTATTAATCGGCATTGTG
ATGACCTTCGCGGGTATCCCCTTGGTGGGTATCTTCTTTATCTTGGTCTTGATATTAGGGATTGCCCAAATCCCCGCGCT
ATTAGTGACGCTTCCAGCGATTGCTTATATCTGGATGGCGGGCGATAACGGCACAGTCGGCAGTATCATCTATACCGTGT
TGCTGATCCTTGCGGGTGCGGTGGACAACGTACTCAAGCCTATTTTCCTCGGCCGTGGAGTCGATGCTCCCATGCCAGTG
GTTCTCATCGGCGCCTTAGGCGGCATGGCCACCAGCGGTATTTTAGGGATGTTTATTGGCGCCACGCTACTGTCTATCGG
CTACCGCATCTTTATGATGTGGGTGGATGAAGGTCTCGAAGAGGGATTGAGAGAGCAAGATGACAATTGA

Upstream 100 bases:

>100_bases
AAATCGTCTTCACCAACACAGTAACATCAGGGATCTGCCGTTCTGTAGCAATACAGATGATTCAAGTTATAGGTTTATAA
CTCGTTGAGGTAACAACGGA

Downstream 100 bases:

>100_bases
TCACTTTGTTCCCCGCCTCGTGTTAGGCGGGATATGTGCTCTGCTCAGCGGTTGTACTGTGCTCGGTCCTGATTATCAAC
GGCCCGATGTGCCAGAAGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MENNELIAVENRIVTKFMDMFIKFGMLLALASFCYTIFSPFLNIMLWAVILAVVIYPFHQRIAKRLSDKQGRAATLLIVI
GLMILVLPTIMMVSSMTDNMGSLVERVNQNTLEVPTPKESIANIPFVGAKIYDFWLKASTDLPSLVKSLQPHLGDAAKQV
IHALASISASLLMSMFSFIIAGIMMAYGHAGAQSSARIATRIAGPERGAKLVNICSSTIRAVALGVIGVAFIQALLIGIV
MTFAGIPLVGIFFILVLILGIAQIPALLVTLPAIAYIWMAGDNGTVGSIIYTVLLILAGAVDNVLKPIFLGRGVDAPMPV
VLIGALGGMATSGILGMFIGATLLSIGYRIFMMWVDEGLEEGLREQDDN

Sequences:

>Translated_369_residues
MENNELIAVENRIVTKFMDMFIKFGMLLALASFCYTIFSPFLNIMLWAVILAVVIYPFHQRIAKRLSDKQGRAATLLIVI
GLMILVLPTIMMVSSMTDNMGSLVERVNQNTLEVPTPKESIANIPFVGAKIYDFWLKASTDLPSLVKSLQPHLGDAAKQV
IHALASISASLLMSMFSFIIAGIMMAYGHAGAQSSARIATRIAGPERGAKLVNICSSTIRAVALGVIGVAFIQALLIGIV
MTFAGIPLVGIFFILVLILGIAQIPALLVTLPAIAYIWMAGDNGTVGSIIYTVLLILAGAVDNVLKPIFLGRGVDAPMPV
VLIGALGGMATSGILGMFIGATLLSIGYRIFMMWVDEGLEEGLREQDDN
>Mature_369_residues
MENNELIAVENRIVTKFMDMFIKFGMLLALASFCYTIFSPFLNIMLWAVILAVVIYPFHQRIAKRLSDKQGRAATLLIVI
GLMILVLPTIMMVSSMTDNMGSLVERVNQNTLEVPTPKESIANIPFVGAKIYDFWLKASTDLPSLVKSLQPHLGDAAKQV
IHALASISASLLMSMFSFIIAGIMMAYGHAGAQSSARIATRIAGPERGAKLVNICSSTIRAVALGVIGVAFIQALLIGIV
MTFAGIPLVGIFFILVLILGIAQIPALLVTLPAIAYIWMAGDNGTVGSIIYTVLLILAGAVDNVLKPIFLGRGVDAPMPV
VLIGALGGMATSGILGMFIGATLLSIGYRIFMMWVDEGLEEGLREQDDN

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=329, Percent_Identity=29.483282674772, Blast_Score=149, Evalue=4e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39603; Mature: 39603

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENNELIAVENRIVTKFMDMFIKFGMLLALASFCYTIFSPFLNIMLWAVILAVVIYPFHQ
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIAKRLSDKQGRAATLLIVIGLMILVLPTIMMVSSMTDNMGSLVERVNQNTLEVPTPKES
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
IANIPFVGAKIYDFWLKASTDLPSLVKSLQPHLGDAAKQVIHALASISASLLMSMFSFII
HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AGIMMAYGHAGAQSSARIATRIAGPERGAKLVNICSSTIRAVALGVIGVAFIQALLIGIV
HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTFAGIPLVGIFFILVLILGIAQIPALLVTLPAIAYIWMAGDNGTVGSIIYTVLLILAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
VDNVLKPIFLGRGVDAPMPVVLIGALGGMATSGILGMFIGATLLSIGYRIFMMWVDEGLE
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGLREQDDN
HHHHCCCCC
>Mature Secondary Structure
MENNELIAVENRIVTKFMDMFIKFGMLLALASFCYTIFSPFLNIMLWAVILAVVIYPFHQ
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIAKRLSDKQGRAATLLIVIGLMILVLPTIMMVSSMTDNMGSLVERVNQNTLEVPTPKES
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
IANIPFVGAKIYDFWLKASTDLPSLVKSLQPHLGDAAKQVIHALASISASLLMSMFSFII
HCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AGIMMAYGHAGAQSSARIATRIAGPERGAKLVNICSSTIRAVALGVIGVAFIQALLIGIV
HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTFAGIPLVGIFFILVLILGIAQIPALLVTLPAIAYIWMAGDNGTVGSIIYTVLLILAGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
VDNVLKPIFLGRGVDAPMPVVLIGALGGMATSGILGMFIGATLLSIGYRIFMMWVDEGLE
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EGLREQDDN
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]