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The map label for this gene is xni [H]

Identifier: 117921327

GI number: 117921327

Start: 3454115

End: 3454897

Strand: Direct

Name: xni [H]

Synonym: Shewana3_2886

Alternate gene names: 117921327

Gene position: 3454115-3454897 (Clockwise)

Preceding gene: 117921326

Following gene: 117921328

Centisome position: 69.47

GC content: 49.04

Gene sequence:

>783_bases
ATGAATAAGTTTTTAATTATCGATGGTCTCAACTTAGTTCGCCGGATTTATGCGGCGATCCCAGATGAGAACGATATGGA
CAGTTTAACGGAGCGTGTGAGTGTCGCCTGCACTAAACTGCTGCGCATTCACCACCCAACCCATGTCACTATCGTCTGGG
ATGGTGATGAGATGTCTTGGCGAAAACAGCTTTATCCCGATTATAAAAAGGGCCGTAAACCTATGCCAGAGCCTCTGGCC
GCGGGCTTACCTGCACTGCAGGAACACCTTAAAAGCGTACAAATCCAATCAATTTATGCCGCCGCCGAAGCCGATGATGT
TATCGCCACCCTTGCGATGAAAACCGCCAAAGCCCAAGGTGAAGCCGTTATCGTGTCGACCGATAAAGGCTTTAGCCAAC
TCAATCATCCGCGTATCAGTCAATGGGATCATTTTAATCAGCAATACCTCAACATCACAGAGCTTGAGCAAAAGCTCGGA
GTCGATCGTAGCCAATTTCTTGATTTACTGGCGCTGGCGGGTGATAGCGGTAATAAAATCCCCGGTATCGCAGGCATAGG
CCCCAAATCAGCGGCTGAGTTGCTGCGAACCTTCAGAACCTTAGCGGCGTTGTTTTCTTCTCTGCCCAATCTTGGCGCGA
AACAAGCTAAGAAGCTGGCCGAAGGACGAGATATGGCTCGCCTCAGTTATAAATTAGCCCAATTGCAAATCGATTTGCCC
TTAAACATCAACCTCAAGGATTTTAGGGTCAATGGCCCCGCCACTACGCCGCAGCTCGATTAA

Upstream 100 bases:

>100_bases
ACAATTTGCTGGGGGCCTTTGTCGCCCAACATAGGATGAAACTGCCGGGAAGCGCTTATATTCCCTGCTATCAAATAGTG
AAGTAAAACAATAACCGCCA

Downstream 100 bases:

>100_bases
CGCATCTTGTTAACACTAAGTTGCAATAAAGCCGTTTACCTTAGGCCATCAAAGGCGTATTTTATTGACTTGCCAGATAG
TACATTGGATATGCAAAGGA

Product: exonuclease IX

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MNKFLIIDGLNLVRRIYAAIPDENDMDSLTERVSVACTKLLRIHHPTHVTIVWDGDEMSWRKQLYPDYKKGRKPMPEPLA
AGLPALQEHLKSVQIQSIYAAAEADDVIATLAMKTAKAQGEAVIVSTDKGFSQLNHPRISQWDHFNQQYLNITELEQKLG
VDRSQFLDLLALAGDSGNKIPGIAGIGPKSAAELLRTFRTLAALFSSLPNLGAKQAKKLAEGRDMARLSYKLAQLQIDLP
LNINLKDFRVNGPATTPQLD

Sequences:

>Translated_260_residues
MNKFLIIDGLNLVRRIYAAIPDENDMDSLTERVSVACTKLLRIHHPTHVTIVWDGDEMSWRKQLYPDYKKGRKPMPEPLA
AGLPALQEHLKSVQIQSIYAAAEADDVIATLAMKTAKAQGEAVIVSTDKGFSQLNHPRISQWDHFNQQYLNITELEQKLG
VDRSQFLDLLALAGDSGNKIPGIAGIGPKSAAELLRTFRTLAALFSSLPNLGAKQAKKLAEGRDMARLSYKLAQLQIDLP
LNINLKDFRVNGPATTPQLD
>Mature_260_residues
MNKFLIIDGLNLVRRIYAAIPDENDMDSLTERVSVACTKLLRIHHPTHVTIVWDGDEMSWRKQLYPDYKKGRKPMPEPLA
AGLPALQEHLKSVQIQSIYAAAEADDVIATLAMKTAKAQGEAVIVSTDKGFSQLNHPRISQWDHFNQQYLNITELEQKLG
VDRSQFLDLLALAGDSGNKIPGIAGIGPKSAAELLRTFRTLAALFSSLPNLGAKQAKKLAEGRDMARLSYKLAQLQIDLP
LNINLKDFRVNGPATTPQLD

Specific function: May have a role in processing of nucleic acids. It is probably not an exonuclease; metal-binding residues found in paralogs are missing [H]

COG id: COG0258

COG function: function code L; 5'-3' exonuclease (including N-terminal domain of PolI)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 5'-3' exonuclease domain [H]

Homologues:

Organism=Escherichia coli, GI226510970, Length=250, Percent_Identity=39.6, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1790294, Length=266, Percent_Identity=33.0827067669173, Blast_Score=128, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020046
- InterPro:   IPR020045
- InterPro:   IPR020047
- InterPro:   IPR008918
- InterPro:   IPR003583
- InterPro:   IPR022895 [H]

Pfam domain/function: PF01367 5_3_exonuc; PF02739 5_3_exonuc_N [H]

EC number: 3.1.11.- [C]

Molecular weight: Translated: 28806; Mature: 28806

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKFLIIDGLNLVRRIYAAIPDENDMDSLTERVSVACTKLLRIHHPTHVTIVWDGDEMSW
CCCEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
RKQLYPDYKKGRKPMPEPLAAGLPALQEHLKSVQIQSIYAAAEADDVIATLAMKTAKAQG
HHHCCCCHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EAVIVSTDKGFSQLNHPRISQWDHFNQQYLNITELEQKLGVDRSQFLDLLALAGDSGNKI
CEEEEECCCCHHHCCCCCCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
PGIAGIGPKSAAELLRTFRTLAALFSSLPNLGAKQAKKLAEGRDMARLSYKLAQLQIDLP
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHEEECCC
LNINLKDFRVNGPATTPQLD
CCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MNKFLIIDGLNLVRRIYAAIPDENDMDSLTERVSVACTKLLRIHHPTHVTIVWDGDEMSW
CCCEEEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
RKQLYPDYKKGRKPMPEPLAAGLPALQEHLKSVQIQSIYAAAEADDVIATLAMKTAKAQG
HHHCCCCHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
EAVIVSTDKGFSQLNHPRISQWDHFNQQYLNITELEQKLGVDRSQFLDLLALAGDSGNKI
CEEEEECCCCHHHCCCCCCCCCHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
PGIAGIGPKSAAELLRTFRTLAALFSSLPNLGAKQAKKLAEGRDMARLSYKLAQLQIDLP
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHEEECCC
LNINLKDFRVNGPATTPQLD
CCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]