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The map label for this gene is ygdH [H]

Identifier: 117921326

GI number: 117921326

Start: 3452745

End: 3454100

Strand: Direct

Name: ygdH [H]

Synonym: Shewana3_2885

Alternate gene names: 117921326

Gene position: 3452745-3454100 (Clockwise)

Preceding gene: 117921325

Following gene: 117921327

Centisome position: 69.44

GC content: 49.19

Gene sequence:

>1356_bases
ATGATAGTAAAAGTCAGCCCAAAGGGCAGCATGGATCAGCTTTCACAACTCGAAGTTGATCGCCTCAAAAAAAGCGCCAA
GAGCGCCCTATATCAACTGTATCGTAACTGCTCACTCGCCGTACTCGCCGCAGGCCTTAAGACCGACAATTCTAAAGCAC
TTTTCGAGCAATACCAGAGCTTCGATATCAATGTGTTGCAACGTGAACGCGGGGTTAAGCTAGAGCTTATCAATCCCCCT
GAACAAGCCTTTGTCGACGGCCAAATTATCACCGGGATCCAAGAACACTTATTTTCGGTGCTGCGGGATATCCTCTACAT
CAGCGATAAGTACGACACCCTTAAACATATCAATCTGACCAACGCCAGCCACATTACAAACGTAGTGTTCGATATTTTGC
GTAACGCCCGCGCCATCGCACCGATGAAAGACCCCAATGTGGTCGTCTGTTGGGGCGGCCACAGTATTAATGCCGTCGAA
TACCAATACACCCGCGAGGTGGGTTATCAGCTCGGCCTAAGGGAACTCGATATTTGCACCGGCTGTGGCCCAGGCGCGAT
GGAAGGCCCAATGAAGGGCGCCGCCATTGGACATGCGAAACAACGGATTAAAAATGCCCGCTATATTGGTCTTACTGAGC
CGAGTATTATTGCCGCCGAGCCGCCTAACCAAATTGTGAACGAGCTGGTGATTTTGCCCGATATCGAAAAACGCCTTGAA
GCCTTCGTGCGCTTAGGCCATGGCATTATTATCTTCCCCGGCGGCGCGGGTACCGCCGAAGAGCTACTGTATATTCTGGG
GATTTTGCTCAATAAAGAAAATCAGGAAACCCCCTTCCCACTGGTACTGACGGGTCCCAGTGAGAGCGCGGATTATTTTA
TTAAAATTGATGAGTTTATCGCCGCCACCTTAGGAGCCGAGGCGCAGCAAAAATATCAAATCATCATAGACAATCCCGCC
GAAGTCGCCCGAGTGATGAAGCAAGGCATGGAACAAGTGAAAAACCATCGCCGCGCCACCGGCGATGCCTATCAATATCA
ATGGGGACTGAAGATAGAACCCGAGTTCCAACTGCCGTTTATCCCCAGTCATGAGGTGATGGCTAACTTATATTTACATT
TTCAAGCGAATAAAGCGGAATTAGCCGCTAATTTACGCAAAGCGTTTTCGGGTATCGTGGCAGGTAATGTAAAATCAGAC
ACCATCAAGCAGATTGAGCACTTAGGCCCCTTCCACATAAAAGGGGACCCACATTTAATGGAGCTGATGGACAATTTGCT
GGGGGCCTTTGTCGCCCAACATAGGATGAAACTGCCGGGAAGCGCTTATATTCCCTGCTATCAAATAGTGAAGTAA

Upstream 100 bases:

>100_bases
AAGCAAAACATGAAAGCAGAGACAGGGTTGTGATTGACGTATAACAAAGTCAGCCTATACGTCGCCTCTTATCACTCCTG
TCGAGACGAAGGAGTGATAA

Downstream 100 bases:

>100_bases
AACAATAACCGCCAATGAATAAGTTTTTAATTATCGATGGTCTCAACTTAGTTCGCCGGATTTATGCGGCGATCCCAGAT
GAGAACGATATGGACAGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MIVKVSPKGSMDQLSQLEVDRLKKSAKSALYQLYRNCSLAVLAAGLKTDNSKALFEQYQSFDINVLQRERGVKLELINPP
EQAFVDGQIITGIQEHLFSVLRDILYISDKYDTLKHINLTNASHITNVVFDILRNARAIAPMKDPNVVVCWGGHSINAVE
YQYTREVGYQLGLRELDICTGCGPGAMEGPMKGAAIGHAKQRIKNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
AFVRLGHGIIIFPGGAGTAEELLYILGILLNKENQETPFPLVLTGPSESADYFIKIDEFIAATLGAEAQQKYQIIIDNPA
EVARVMKQGMEQVKNHRRATGDAYQYQWGLKIEPEFQLPFIPSHEVMANLYLHFQANKAELAANLRKAFSGIVAGNVKSD
TIKQIEHLGPFHIKGDPHLMELMDNLLGAFVAQHRMKLPGSAYIPCYQIVK

Sequences:

>Translated_451_residues
MIVKVSPKGSMDQLSQLEVDRLKKSAKSALYQLYRNCSLAVLAAGLKTDNSKALFEQYQSFDINVLQRERGVKLELINPP
EQAFVDGQIITGIQEHLFSVLRDILYISDKYDTLKHINLTNASHITNVVFDILRNARAIAPMKDPNVVVCWGGHSINAVE
YQYTREVGYQLGLRELDICTGCGPGAMEGPMKGAAIGHAKQRIKNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
AFVRLGHGIIIFPGGAGTAEELLYILGILLNKENQETPFPLVLTGPSESADYFIKIDEFIAATLGAEAQQKYQIIIDNPA
EVARVMKQGMEQVKNHRRATGDAYQYQWGLKIEPEFQLPFIPSHEVMANLYLHFQANKAELAANLRKAFSGIVAGNVKSD
TIKQIEHLGPFHIKGDPHLMELMDNLLGAFVAQHRMKLPGSAYIPCYQIVK
>Mature_451_residues
MIVKVSPKGSMDQLSQLEVDRLKKSAKSALYQLYRNCSLAVLAAGLKTDNSKALFEQYQSFDINVLQRERGVKLELINPP
EQAFVDGQIITGIQEHLFSVLRDILYISDKYDTLKHINLTNASHITNVVFDILRNARAIAPMKDPNVVVCWGGHSINAVE
YQYTREVGYQLGLRELDICTGCGPGAMEGPMKGAAIGHAKQRIKNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
AFVRLGHGIIIFPGGAGTAEELLYILGILLNKENQETPFPLVLTGPSESADYFIKIDEFIAATLGAEAQQKYQIIIDNPA
EVARVMKQGMEQVKNHRRATGDAYQYQWGLKIEPEFQLPFIPSHEVMANLYLHFQANKAELAANLRKAFSGIVAGNVKSD
TIKQIEHLGPFHIKGDPHLMELMDNLLGAFVAQHRMKLPGSAYIPCYQIVK

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=452, Percent_Identity=65.929203539823, Blast_Score=621, Evalue=1e-179,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 50186; Mature: 50186

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS00300 SRP54

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVKVSPKGSMDQLSQLEVDRLKKSAKSALYQLYRNCSLAVLAAGLKTDNSKALFEQYQS
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHC
FDINVLQRERGVKLELINPPEQAFVDGQIITGIQEHLFSVLRDILYISDKYDTLKHINLT
CCCEEEECCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHEECCC
NASHITNVVFDILRNARAIAPMKDPNVVVCWGGHSINAVEYQYTREVGYQLGLRELDICT
CHHHHHHHHHHHHHCCCEECCCCCCCEEEEECCCCCCEEEEHHHHHHHHHCCCHHHHHCC
GCGPGAMEGPMKGAAIGHAKQRIKNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
CCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCHHHHHHHEEECCCHHHHHH
AFVRLGHGIIIFPGGAGTAEELLYILGILLNKENQETPFPLVLTGPSESADYFIKIDEFI
HHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEEHHHHH
AATLGAEAQQKYQIIIDNPAEVARVMKQGMEQVKNHRRATGDAYQYQWGLKIEPEFQLPF
HHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEECCCCCCCC
IPSHEVMANLYLHFQANKAELAANLRKAFSGIVAGNVKSDTIKQIEHLGPFHIKGDPHLM
CCCHHHHEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCHHH
ELMDNLLGAFVAQHRMKLPGSAYIPCYQIVK
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
>Mature Secondary Structure
MIVKVSPKGSMDQLSQLEVDRLKKSAKSALYQLYRNCSLAVLAAGLKTDNSKALFEQYQS
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHC
FDINVLQRERGVKLELINPPEQAFVDGQIITGIQEHLFSVLRDILYISDKYDTLKHINLT
CCCEEEECCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHEECCC
NASHITNVVFDILRNARAIAPMKDPNVVVCWGGHSINAVEYQYTREVGYQLGLRELDICT
CHHHHHHHHHHHHHCCCEECCCCCCCEEEEECCCCCCEEEEHHHHHHHHHCCCHHHHHCC
GCGPGAMEGPMKGAAIGHAKQRIKNARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLE
CCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCHHHHHHHEEECCCHHHHHH
AFVRLGHGIIIFPGGAGTAEELLYILGILLNKENQETPFPLVLTGPSESADYFIKIDEFI
HHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEEHHHHH
AATLGAEAQQKYQIIIDNPAEVARVMKQGMEQVKNHRRATGDAYQYQWGLKIEPEFQLPF
HHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEECCCCCCCC
IPSHEVMANLYLHFQANKAELAANLRKAFSGIVAGNVKSDTIKQIEHLGPFHIKGDPHLM
CCCHHHHEEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCCCHHH
ELMDNLLGAFVAQHRMKLPGSAYIPCYQIVK
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]