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The map label for this gene is yqcC [C]

Identifier: 117921266

GI number: 117921266

Start: 3374146

End: 3374481

Strand: Reverse

Name: yqcC [C]

Synonym: Shewana3_2825

Alternate gene names: 117921266

Gene position: 3374481-3374146 (Counterclockwise)

Preceding gene: 117921269

Following gene: 117921265

Centisome position: 67.87

GC content: 47.92

Gene sequence:

>336_bases
ATGGACCTTATATCGATGCTTTACAGCCAAACTCAAACCAAACTAGCCCAAATTGCCCACGAGCTACAAAGTGCAGGGCT
TTGGTCTACTCGTGCGCCCAGTGATGAAGCTATGGCCAGTACGGCGCCTTTTGCCTGCGATCTGATGTCGTTAGCGCAAT
GGTTGCAGTTTATCTTTATTCCGCGCATGCAAGCCCTTATCGATGCGGGGCAACCTTTGCCAAGTAAAATTGCGATAGCC
CCGATGGCGGAACATGTGTGGTCCGAACAAGCGGCGTTAACACCTTTAATCGGTGTCTTAAATGAATTGGATATGTTGTT
AAATGAACCTAGATGA

Upstream 100 bases:

>100_bases
AAATTGGCGACATTATAGGGGGAAGTTGTGCGCGATGGTATGATTGCCACACTTTTATCGCCTCAGTCGCAGCGCTTAAT
TGTCGAATGACTGTGGCTTA

Downstream 100 bases:

>100_bases
TGATTGGCTGGATATGCCAGAGGATAAATTCAACCCAACCGAGAGCGACGAACAGTCAGAGCCTGCGCCTGAACTGCGTG
TTTTGTATCAAGACGAGCAC

Product: dTDP-4-dehydrorhamnose 3,5-epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MDLISMLYSQTQTKLAQIAHELQSAGLWSTRAPSDEAMASTAPFACDLMSLAQWLQFIFIPRMQALIDAGQPLPSKIAIA
PMAEHVWSEQAALTPLIGVLNELDMLLNEPR

Sequences:

>Translated_111_residues
MDLISMLYSQTQTKLAQIAHELQSAGLWSTRAPSDEAMASTAPFACDLMSLAQWLQFIFIPRMQALIDAGQPLPSKIAIA
PMAEHVWSEQAALTPLIGVLNELDMLLNEPR
>Mature_111_residues
MDLISMLYSQTQTKLAQIAHELQSAGLWSTRAPSDEAMASTAPFACDLMSLAQWLQFIFIPRMQALIDAGQPLPSKIAIA
PMAEHVWSEQAALTPLIGVLNELDMLLNEPR

Specific function: Unknown

COG id: COG3098

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yqcC [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007384 [H]

Pfam domain/function: PF04287 DUF446 [H]

EC number: NA

Molecular weight: Translated: 12222; Mature: 12222

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
6.3 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLISMLYSQTQTKLAQIAHELQSAGLWSTRAPSDEAMASTAPFACDLMSLAQWLQFIFI
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
PRMQALIDAGQPLPSKIAIAPMAEHVWSEQAALTPLIGVLNELDMLLNEPR
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDLISMLYSQTQTKLAQIAHELQSAGLWSTRAPSDEAMASTAPFACDLMSLAQWLQFIFI
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
PRMQALIDAGQPLPSKIAIAPMAEHVWSEQAALTPLIGVLNELDMLLNEPR
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]