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The map label for this gene is dapD [H]

Identifier: 117921259

GI number: 117921259

Start: 3366292

End: 3367116

Strand: Direct

Name: dapD [H]

Synonym: Shewana3_2818

Alternate gene names: 117921259

Gene position: 3366292-3367116 (Clockwise)

Preceding gene: 117921258

Following gene: 117921260

Centisome position: 67.7

GC content: 48.85

Gene sequence:

>825_bases
ATGGAGGCTTTACGCCAACGTATTGAGGCCGCATTTGAAGCGCGTGCCGACATCACACCAAGCACTGTTGACGCAAGCGT
GCGTAACGATGTGCAAAATGTCATCAATATGCTCGATAAAGGTGAACTACGCGTCGCCGAGAAAATCGATGGCCAATGGC
ATGTACATCAATGGTTGAAGAAGGCGGTATTACTGTCATTCCGTATTTTCGATAACGCCGTTATCGATGGTGCCGAAACC
AAATATTTCGATAAAGTACCGTTAAAGTTCGCCGAATATGACGAAGCCCGCTTTAAAGCCGAAGCCATCCGTGTGGTGCC
ATCGGCAACCGTACGTAAAGGTTCATTCATCGGTAAAAACACCGTATTAATGCCATCTTATGTAAACCTTGGTGCTTACG
TTGACGAAGGCACTATGGTTGACACTTGGGCAACCGTTGGCTCATGTGCGCAAATCGGTAAGAACGTGCACTTATCTGGC
GGTGTGGGTATCGGTGGCGTACTCGAACCGCTGCAAGCGGGCCCTACCATTATCGAAGACAACTGCTTTATCGGCGCACG
CTCAGAAATCGTTGAAGGCGTCGTGGTTGAAGAAGGCTCGGTGATTTCCATGGGCGTTTATATCGGCCAAAGTACCCGTA
TCTATGACCGTGAAACTGGCGAAATTCACTACGGTCGTGTACCAGCTGGCTCAGTCGTAGTATCGGGTAACCTGCCATCG
GCTTGCGGTAAATACAGCCTATACGCTGCGATTATCGTCAAGAAAGTAGATGCGAAAACCCGTGGTAAAGTGGGTATCAA
CGAACTGTTACGTATCGTCGATTAA

Upstream 100 bases:

>100_bases
ACTCAATGAAACCCAAGAGAATACGCTCAAGGAAGCCTTGATTAGCGCGCTGAGCGCCATCAACACAGAGTCAACCAATT
AACCAAAACGGGAGAAGTAA

Downstream 100 bases:

>100_bases
GCGAAATTCGCGCTACACGCAATCCTAAAATGCCAGGCAAATGCTTGGCATTTTTTATGGAAAATGCTTGGCATTTTTTA
TGGAAAATGCTTGGCATTTT

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MEALRQRIEAAFEARADITPSTVDASVRNDVQNVINMLDKGELRVAEKIDGQWHVHQWLKKAVLLSFRIFDNAVIDGAET
KYFDKVPLKFAEYDEARFKAEAIRVVPSATVRKGSFIGKNTVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQAGPTIIEDNCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS
ACGKYSLYAAIIVKKVDAKTRGKVGINELLRIVD

Sequences:

>Translated_274_residues
MEALRQRIEAAFEARADITPSTVDASVRNDVQNVINMLDKGELRVAEKIDGQWHVHQWLKKAVLLSFRIFDNAVIDGAET
KYFDKVPLKFAEYDEARFKAEAIRVVPSATVRKGSFIGKNTVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQAGPTIIEDNCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS
ACGKYSLYAAIIVKKVDAKTRGKVGINELLRIVD
>Mature_274_residues
MEALRQRIEAAFEARADITPSTVDASVRNDVQNVINMLDKGELRVAEKIDGQWHVHQWLKKAVLLSFRIFDNAVIDGAET
KYFDKVPLKFAEYDEARFKAEAIRVVPSATVRKGSFIGKNTVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQAGPTIIEDNCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS
ACGKYSLYAAIIVKKVDAKTRGKVGINELLRIVD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=274, Percent_Identity=81.3868613138686, Blast_Score=440, Evalue=1e-125,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR018357
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 29719; Mature: 29719

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEALRQRIEAAFEARADITPSTVDASVRNDVQNVINMLDKGELRVAEKIDGQWHVHQWLK
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCHHHHHHH
KAVLLSFRIFDNAVIDGAETKYFDKVPLKFAEYDEARFKAEAIRVVPSATVRKGSFIGKN
HHHHHHHHHHHHHEECCCCCCCCCCCCCCHHCCHHHHHHHHHHEECCCCCCCCCCCCCCC
TVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQAGPTIIED
EEECCCHHCCCEEECCCCEEEHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCEEEC
NCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS
CCEECCHHHHHCCEEECCCCEEEEEEEECCCCEEEECCCCCEEECCCCCCCEEEECCCCC
ACGKYSLYAAIIVKKVDAKTRGKVGINELLRIVD
HHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MEALRQRIEAAFEARADITPSTVDASVRNDVQNVINMLDKGELRVAEKIDGQWHVHQWLK
CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCHHHHHHH
KAVLLSFRIFDNAVIDGAETKYFDKVPLKFAEYDEARFKAEAIRVVPSATVRKGSFIGKN
HHHHHHHHHHHHHEECCCCCCCCCCCCCCHHCCHHHHHHHHHHEECCCCCCCCCCCCCCC
TVLMPSYVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQAGPTIIED
EEECCCHHCCCEEECCCCEEEHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHCCCCEEEC
NCFIGARSEIVEGVVVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS
CCEECCHHHHHCCEEECCCCEEEEEEEECCCCEEEECCCCCEEECCCCCCCEEEECCCCC
ACGKYSLYAAIIVKKVDAKTRGKVGINELLRIVD
HHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA