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The map label for this gene is skp [H]

Identifier: 117921247

GI number: 117921247

Start: 3351948

End: 3352445

Strand: Reverse

Name: skp [H]

Synonym: Shewana3_2806

Alternate gene names: 117921247

Gene position: 3352445-3351948 (Counterclockwise)

Preceding gene: 117921248

Following gene: 117921246

Centisome position: 67.42

GC content: 43.17

Gene sequence:

>498_bases
ATGGTAAACCGTGCCCTGGTGACGTTGGCTTTATTAGGTGCACCTTTAGCGGCGCAGGCAGAAAATATTGCTGTTGTTGA
TATGGGCGCTGTGTTTGAGCAGTTACCTCAACGTGAGCAAATCTCCCAATCTCTGAAATCAGAGTTTGGTGATCGCATGG
CTGAAGTTCAGAAAATGCAAGAAGAAATGCGTTCTCTGATGGAGAAGCAGCAACGTGACGGCGCGTTAATGAATGACACG
CAAAAAACTGAGCTGGTTCGTAAAATGGAAGCGTTAAAATCTGAATATCAGCTAAAAGGTAAAGCGTTGGATGAAGACTT
ACGTCGTCGCCAAGGTGAAGAGCAAAACAAACTGTTAGTTAAGGTTCAAAAAGCCATTAACACTATCGCTGAAAAAGAAA
AATACGATTTAGTTTTACAGCGCGGTGCCGTCATTTATGTTAAGCCAAATGCTGACATCAGTGGCAAAGTGGTTGAAGCC
TTAAGCAAAGGCAAGTAA

Upstream 100 bases:

>100_bases
AGATCTTCTCGTTCAATATTGGCAAAACTTTTTAAAAGGCATACACTCGGCAGGTTTTGCTGAATATAACAAAGGTAACA
AGGAGTCTATTTTGAACAAG

Downstream 100 bases:

>100_bases
TTAATGAAAAGTGTGACTTTAAAAGAGCTAAGCCTGTTATTAGATGGCGTTGTCCAAGGTGATGAAACGTTAGTGATCAA
CAGCGTTGCGACACTTGAAC

Product: outer membrane chaperone Skp (OmpH)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MVNRALVTLALLGAPLAAQAENIAVVDMGAVFEQLPQREQISQSLKSEFGDRMAEVQKMQEEMRSLMEKQQRDGALMNDT
QKTELVRKMEALKSEYQLKGKALDEDLRRRQGEEQNKLLVKVQKAINTIAEKEKYDLVLQRGAVIYVKPNADISGKVVEA
LSKGK

Sequences:

>Translated_165_residues
MVNRALVTLALLGAPLAAQAENIAVVDMGAVFEQLPQREQISQSLKSEFGDRMAEVQKMQEEMRSLMEKQQRDGALMNDT
QKTELVRKMEALKSEYQLKGKALDEDLRRRQGEEQNKLLVKVQKAINTIAEKEKYDLVLQRGAVIYVKPNADISGKVVEA
LSKGK
>Mature_165_residues
MVNRALVTLALLGAPLAAQAENIAVVDMGAVFEQLPQREQISQSLKSEFGDRMAEVQKMQEEMRSLMEKQQRDGALMNDT
QKTELVRKMEALKSEYQLKGKALDEDLRRRQGEEQNKLLVKVQKAINTIAEKEKYDLVLQRGAVIYVKPNADISGKVVEA
LSKGK

Specific function: Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm [H]

COG id: COG2825

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the skp family [H]

Homologues:

Organism=Escherichia coli, GI1786375, Length=141, Percent_Identity=31.2056737588652, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: 580 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005632 [H]

Pfam domain/function: PF03938 OmpH [H]

EC number: NA

Molecular weight: Translated: 18559; Mature: 18559

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNRALVTLALLGAPLAAQAENIAVVDMGAVFEQLPQREQISQSLKSEFGDRMAEVQKMQ
CCHHHHHHHHHHCCCCHHCCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
EEMRSLMEKQQRDGALMNDTQKTELVRKMEALKSEYQLKGKALDEDLRRRQGEEQNKLLV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH
KVQKAINTIAEKEKYDLVLQRGAVIYVKPNADISGKVVEALSKGK
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MVNRALVTLALLGAPLAAQAENIAVVDMGAVFEQLPQREQISQSLKSEFGDRMAEVQKMQ
CCHHHHHHHHHHCCCCHHCCCCEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
EEMRSLMEKQQRDGALMNDTQKTELVRKMEALKSEYQLKGKALDEDLRRRQGEEQNKLLV
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH
KVQKAINTIAEKEKYDLVLQRGAVIYVKPNADISGKVVEALSKGK
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]