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The map label for this gene is ybiT [H]

Identifier: 117921201

GI number: 117921201

Start: 3296071

End: 3297711

Strand: Reverse

Name: ybiT [H]

Synonym: Shewana3_2760

Alternate gene names: 117921201

Gene position: 3297711-3296071 (Counterclockwise)

Preceding gene: 117921202

Following gene: 117921193

Centisome position: 66.32

GC content: 49.42

Gene sequence:

>1641_bases
TTGCCTTGCCAGACGTCCGGCCAACCTAACTCGATTTGGAAGTTCATTTTGATCACTACAGCGAATATCACCATGCAGTT
TGGCTCTAAGCCACTGTTTGAAAACATCTCAGTTAAATTCGGCGGCGGTAACCGTTACGGTCTTATCGGTGCGAACGGCT
GCGGTAAATCAACCTTCATGAAGATCCTTTGCGGTGATCTAGAGCCGAGCAGCGGTAACGTATCCTTAGACGTCAACGAG
CGTCTGGGCAAGTTAAGCCAGAACCAATTCGGTTATGAGGAATTCACCCTTATCGACACAGTGATCATGGGCCACCGTGA
ACTGTGGAAGGTGAAACAAGAGCGTGACCGTATTTATTCGCTGCCAGAAATGAGCGAAGAAGACGGCATTGCCGTGGCAA
ACCTTGAGATGGAATTTGCCGAAATGGACGGTTACACCGCCGAATCTCGCGCGGGTGAACTCTTGCTCGGTGTCGGTATT
GGTATCGAAAGCCATTTCGGTCTGATGTCTGAAATCGCTCCAGGTTTAAAACTGCGGGTGTTATTGGCGCAGGCGCTGTT
CTCCGATCCAGACGTACTGCTGCTCGACGAACCTACCAACAACTTGGACATCGACACTATCCGCTGGTTACAGGACGTAC
TGAACCAACGCGACAGCACCATGATCATCATTTCGCACGACCGTTACTTCTTAAACTCAGTCTGTACCCATATGGCAGAC
TTAGACTACGGTGAACTGCGCGTTTACCCAGGTAACTACGACGAATACATGCAAGCGGCCTCTCAGGCCCGTGAGCGTCT
GCTGGCCGACAATGCCAAGAAGAAAGCGCAAATCTCTGAGCTGCAAACCTTCGTGGCGCGCTTCTCTGCAAACGCTTCTA
AGGCAAAACAAGCGACTTCGCGCGCGCGTCAAATCGATAAGATCAAGCTGGAAGAAGTTAAAGCCTCTAGCCGCGTTAAC
CCATTCATTCGTTTCGATCAGGAAAAGAAACTGTTCCGTAACGCATTAGTGGTTGAAAACTTAGCCAAAGGTTACGACAC
GCCGCTGTTTAAAGACTTAAACCTTATCGTCGAAGTGGGTGAGCGTATCGCAATCCTCGGTGAGAACGGTGTGGGTAAAA
CCACACTGCTGCGTACCTTAATCCATGATATTCCTCAGGATGAAGGTCTGATCCAATGGTCTGAAAACAGCAACATCGGT
TACTACGCGCAGGACCATGAGTCAGATTTCGAAAACGATATGACCCTGTTCGAGTGGATGAGCCAATGGCGTAAACCAGA
AGACGACGACCAAGCGGTACGCGGTATTTTAGGCCGTATGCTGTTTAGCGCCGACGACATCAAAAAGTCAGTCAAAGTGC
TGTCGGGTGGTGAAAAGGGTCGTATGTTATTTGGTAAGCTCATCATGCAAAAGCCAAATATCCTGATGCTCGACGAACCA
ACCAACCACATGGATATGGAATCGATCGAATCATTAAACAACGCGCTGGAAAAATACGAAGGCACATTACTGTTCGTGAG
CCACGACCGCGCATTCGTATCGTCACTGGCCAACCGTATCCTTGAAATCACCCCAAACGGCGTGAATGACTTCAAGGGCA
CCTACGATGAGTTCCTCGTGAGCAAAGGTATCGAAGGCTAA

Upstream 100 bases:

>100_bases
CTTTTTAGTTGATAATTTAGCCCAAACTGCTATAGTGCCACGTTTATTTTTACCCCCTCAGGTTAGACAACTTGGCTTTT
GCAAATAGGTTTATACTTAG

Downstream 100 bases:

>100_bases
TCACTGGTTTTGCCTTAAGTATTCAGATAAAAAACGCCGCTTATTAGCGGCGTTTTTGTTGCTGAGGTTTGAATTGCGCG
CTTAACTTTGTGTTTAACTT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 546; Mature: 545

Protein sequence:

>546_residues
MPCQTSGQPNSIWKFILITTANITMQFGSKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILCGDLEPSSGNVSLDVNE
RLGKLSQNQFGYEEFTLIDTVIMGHRELWKVKQERDRIYSLPEMSEEDGIAVANLEMEFAEMDGYTAESRAGELLLGVGI
GIESHFGLMSEIAPGLKLRVLLAQALFSDPDVLLLDEPTNNLDIDTIRWLQDVLNQRDSTMIIISHDRYFLNSVCTHMAD
LDYGELRVYPGNYDEYMQAASQARERLLADNAKKKAQISELQTFVARFSANASKAKQATSRARQIDKIKLEEVKASSRVN
PFIRFDQEKKLFRNALVVENLAKGYDTPLFKDLNLIVEVGERIAILGENGVGKTTLLRTLIHDIPQDEGLIQWSENSNIG
YYAQDHESDFENDMTLFEWMSQWRKPEDDDQAVRGILGRMLFSADDIKKSVKVLSGGEKGRMLFGKLIMQKPNILMLDEP
TNHMDMESIESLNNALEKYEGTLLFVSHDRAFVSSLANRILEITPNGVNDFKGTYDEFLVSKGIEG

Sequences:

>Translated_546_residues
MPCQTSGQPNSIWKFILITTANITMQFGSKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILCGDLEPSSGNVSLDVNE
RLGKLSQNQFGYEEFTLIDTVIMGHRELWKVKQERDRIYSLPEMSEEDGIAVANLEMEFAEMDGYTAESRAGELLLGVGI
GIESHFGLMSEIAPGLKLRVLLAQALFSDPDVLLLDEPTNNLDIDTIRWLQDVLNQRDSTMIIISHDRYFLNSVCTHMAD
LDYGELRVYPGNYDEYMQAASQARERLLADNAKKKAQISELQTFVARFSANASKAKQATSRARQIDKIKLEEVKASSRVN
PFIRFDQEKKLFRNALVVENLAKGYDTPLFKDLNLIVEVGERIAILGENGVGKTTLLRTLIHDIPQDEGLIQWSENSNIG
YYAQDHESDFENDMTLFEWMSQWRKPEDDDQAVRGILGRMLFSADDIKKSVKVLSGGEKGRMLFGKLIMQKPNILMLDEP
TNHMDMESIESLNNALEKYEGTLLFVSHDRAFVSSLANRILEITPNGVNDFKGTYDEFLVSKGIEG
>Mature_545_residues
PCQTSGQPNSIWKFILITTANITMQFGSKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILCGDLEPSSGNVSLDVNER
LGKLSQNQFGYEEFTLIDTVIMGHRELWKVKQERDRIYSLPEMSEEDGIAVANLEMEFAEMDGYTAESRAGELLLGVGIG
IESHFGLMSEIAPGLKLRVLLAQALFSDPDVLLLDEPTNNLDIDTIRWLQDVLNQRDSTMIIISHDRYFLNSVCTHMADL
DYGELRVYPGNYDEYMQAASQARERLLADNAKKKAQISELQTFVARFSANASKAKQATSRARQIDKIKLEEVKASSRVNP
FIRFDQEKKLFRNALVVENLAKGYDTPLFKDLNLIVEVGERIAILGENGVGKTTLLRTLIHDIPQDEGLIQWSENSNIGY
YAQDHESDFENDMTLFEWMSQWRKPEDDDQAVRGILGRMLFSADDIKKSVKVLSGGEKGRMLFGKLIMQKPNILMLDEPT
NHMDMESIESLNNALEKYEGTLLFVSHDRAFVSSLANRILEITPNGVNDFKGTYDEFLVSKGIEG

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=532, Percent_Identity=29.6992481203008, Blast_Score=251, Evalue=1e-66,
Organism=Homo sapiens, GI10947137, Length=552, Percent_Identity=28.804347826087, Blast_Score=236, Evalue=3e-62,
Organism=Homo sapiens, GI27881506, Length=552, Percent_Identity=28.804347826087, Blast_Score=235, Evalue=7e-62,
Organism=Homo sapiens, GI10947135, Length=536, Percent_Identity=27.7985074626866, Blast_Score=201, Evalue=2e-51,
Organism=Homo sapiens, GI69354671, Length=537, Percent_Identity=27.9329608938547, Blast_Score=201, Evalue=2e-51,
Organism=Escherichia coli, GI1787041, Length=530, Percent_Identity=78.6792452830189, Blast_Score=883, Evalue=0.0,
Organism=Escherichia coli, GI1789751, Length=526, Percent_Identity=30.9885931558935, Blast_Score=273, Evalue=3e-74,
Organism=Escherichia coli, GI1787182, Length=518, Percent_Identity=30.6949806949807, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI2367384, Length=521, Percent_Identity=29.7504798464491, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI1786975, Length=529, Percent_Identity=23.6294896030246, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081709, Length=257, Percent_Identity=29.5719844357977, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1786398, Length=241, Percent_Identity=30.7053941908714, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1788165, Length=208, Percent_Identity=27.8846153846154, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787029, Length=247, Percent_Identity=25.9109311740891, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1789672, Length=211, Percent_Identity=28.436018957346, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI48994943, Length=246, Percent_Identity=25.609756097561, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786345, Length=250, Percent_Identity=26.4, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1790739, Length=255, Percent_Identity=27.0588235294118, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788761, Length=249, Percent_Identity=23.6947791164659, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1786803, Length=234, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1786872, Length=240, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790525, Length=228, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI87081834, Length=202, Percent_Identity=30.6930693069307, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1788644, Length=242, Percent_Identity=26.0330578512397, Blast_Score=63, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=525, Percent_Identity=30.6666666666667, Blast_Score=253, Evalue=2e-67,
Organism=Caenorhabditis elegans, GI17553372, Length=550, Percent_Identity=30.7272727272727, Blast_Score=239, Evalue=3e-63,
Organism=Caenorhabditis elegans, GI17559834, Length=544, Percent_Identity=28.6764705882353, Blast_Score=218, Evalue=6e-57,
Organism=Caenorhabditis elegans, GI193202349, Length=216, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=533, Percent_Identity=30.5816135084428, Blast_Score=259, Evalue=5e-70,
Organism=Saccharomyces cerevisiae, GI6321121, Length=556, Percent_Identity=29.6762589928058, Blast_Score=236, Evalue=8e-63,
Organism=Saccharomyces cerevisiae, GI6325030, Length=423, Percent_Identity=25.2955082742317, Blast_Score=120, Evalue=6e-28,
Organism=Saccharomyces cerevisiae, GI6323278, Length=409, Percent_Identity=24.9388753056235, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6324314, Length=410, Percent_Identity=24.6341463414634, Blast_Score=111, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24666836, Length=534, Percent_Identity=29.7752808988764, Blast_Score=248, Evalue=7e-66,
Organism=Drosophila melanogaster, GI24642252, Length=532, Percent_Identity=29.6992481203008, Blast_Score=245, Evalue=6e-65,
Organism=Drosophila melanogaster, GI18859989, Length=532, Percent_Identity=29.6992481203008, Blast_Score=245, Evalue=6e-65,
Organism=Drosophila melanogaster, GI24641342, Length=554, Percent_Identity=27.7978339350181, Blast_Score=228, Evalue=8e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 61413; Mature: 61281

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPCQTSGQPNSIWKFILITTANITMQFGSKPLFENISVKFGGGNRYGLIGANGCGKSTFM
CCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEEECCCCEEEEEECCCCCHHHHH
KILCGDLEPSSGNVSLDVNERLGKLSQNQFGYEEFTLIDTVIMGHRELWKVKQERDRIYS
HHHHCCCCCCCCCEEEEHHHHHCCHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCC
LPEMSEEDGIAVANLEMEFAEMDGYTAESRAGELLLGVGIGIESHFGLMSEIAPGLKLRV
CCCCCCCCCEEEEEEEEEHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHHH
LLAQALFSDPDVLLLDEPTNNLDIDTIRWLQDVLNQRDSTMIIISHDRYFLNSVCTHMAD
HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHC
LDYGELRVYPGNYDEYMQAASQARERLLADNAKKKAQISELQTFVARFSANASKAKQATS
CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RARQIDKIKLEEVKASSRVNPFIRFDQEKKLFRNALVVENLAKGYDTPLFKDLNLIVEVG
HHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
ERIAILGENGVGKTTLLRTLIHDIPQDEGLIQWSENSNIGYYAQDHESDFENDMTLFEWM
CEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCEEECCCCCCCCCCHHHHHHH
SQWRKPEDDDQAVRGILGRMLFSADDIKKSVKVLSGGEKGRMLFGKLIMQKPNILMLDEP
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECC
TNHMDMESIESLNNALEKYEGTLLFVSHDRAFVSSLANRILEITPNGVNDFKGTYDEFLV
CCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEEECCCCCCCCCCHHHHHHH
SKGIEG
HCCCCC
>Mature Secondary Structure 
PCQTSGQPNSIWKFILITTANITMQFGSKPLFENISVKFGGGNRYGLIGANGCGKSTFM
CCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEEECCCCEEEEEECCCCCHHHHH
KILCGDLEPSSGNVSLDVNERLGKLSQNQFGYEEFTLIDTVIMGHRELWKVKQERDRIYS
HHHHCCCCCCCCCEEEEHHHHHCCHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCC
LPEMSEEDGIAVANLEMEFAEMDGYTAESRAGELLLGVGIGIESHFGLMSEIAPGLKLRV
CCCCCCCCCEEEEEEEEEHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCHHHHH
LLAQALFSDPDVLLLDEPTNNLDIDTIRWLQDVLNQRDSTMIIISHDRYFLNSVCTHMAD
HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHC
LDYGELRVYPGNYDEYMQAASQARERLLADNAKKKAQISELQTFVARFSANASKAKQATS
CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RARQIDKIKLEEVKASSRVNPFIRFDQEKKLFRNALVVENLAKGYDTPLFKDLNLIVEVG
HHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
ERIAILGENGVGKTTLLRTLIHDIPQDEGLIQWSENSNIGYYAQDHESDFENDMTLFEWM
CEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCEEECCCCCCCCCCHHHHHHH
SQWRKPEDDDQAVRGILGRMLFSADDIKKSVKVLSGGEKGRMLFGKLIMQKPNILMLDEP
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEECC
TNHMDMESIESLNNALEKYEGTLLFVSHDRAFVSSLANRILEITPNGVNDFKGTYDEFLV
CCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHEEECCCCCCCCCCHHHHHHH
SKGIEG
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]