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The map label for this gene is ybhS [H]

Identifier: 117921189

GI number: 117921189

Start: 3279670

End: 3280791

Strand: Reverse

Name: ybhS [H]

Synonym: Shewana3_2748

Alternate gene names: 117921189

Gene position: 3280791-3279670 (Counterclockwise)

Preceding gene: 117921190

Following gene: 117921188

Centisome position: 65.98

GC content: 53.48

Gene sequence:

>1122_bases
ATGCTACGTAGAATTTGGGCCGTGGTGGTCAAAGAACTCAGGCAGTTATCGCGGGATCGCATGACCTTCGGCATGATAGT
GATGATCCCCTTAGTGCAGTTGATGTTGTTTGGTTATGCCATCAATACCGATGCGCGCCATTTGCCCGCAGGTTTAGTGA
ATTTAAGCGATTCTGCCTATAGCCGCGCCTTGGTTAAGGCAGTAGAAGCGACTCAAGTTGTTGATTTTAAACATCGCTAT
TTGAGCGCCGCCGAAGCGGATGCAGCCATTACACGGGGCGAAGTGAAAGCCGTGCTGTATTTAGGCGCCGATCTCGACGA
GCGTTTAGTGCGGCATCCCGCCTTTGCGGGGCAGGCCTATTTTGCCGAGCCCGTGGGTCAATGGTTAGTGGATGGCTCGG
ATACCGTAGTCGCCTCCACTATTCGCAGTTTAAGGCAAATGCCGCTCGATGAAATCGCGGGCAGGGCGGTCAAATCGAAT
CCCCCCAGTTTTGAGGTGGTGCAATACTTTAACCCTGAGCAGCGTTCTGTGGTGAATATCGTCCCCGGCCTCTTGGGGGT
GATTTTGACTATGACCATGGTGATGTTTACCTCGGCCGCGATTGTGCGCGAGCGTGAGCAGGGCAATATGGAGTTTTTAA
TCACCACACCAGTGCGGCCGCTCGAGCTAATGCTAGGTAAAATCACCCCTTATGTATTAGTGGGTTTCGTGCAATTGGCC
ATTATTCTTAGTGCCGGACATTTGCTGTTTGCAGTGCCGATCCGCGGCGGTTTGGACTCGATTGCGCTGGCGGCCATGTT
GTTTATCTGCGCCAGTTTGACCTTAGGCCTAGTGATTTCGACCATAGCGAAAACCCAGTTGCAGTCGATGCAGATGACGG
TGTTTATCCTGCTGCCGTCGATTCTGTTGTCGGGCTTTATGTTCCCCTACGAGGCCATGCCCGTGGCGGCGCAGTGGATT
GCCGAGGCGTTACCCGCGACGCACTTTATGCGCATGTCCCGCGCGATTGTGCTGAGGGATGCCGAGGTGAGTGACTTGCA
ATTTGATGCGCTGTGGATGATTGGCTTTACCTGCCTAGGCCTGCTGGTGGCCAGTCTGCGATTCTCCAAACGTTTGGATT
AA

Upstream 100 bases:

>100_bases
GTGCGCCCCAGCCTTGAGGATGTGTTTGTCACCTGCACGGGTGGGCGTGCCCAGCTAACGCCGCCAAACGGCAGTCAGGC
CACTACCGTGGAGGCTCAAG

Downstream 100 bases:

>100_bases
CGGCTCTCGCTTTGAATGCGAGTTTTGACTTAACGCAAAGTATTGGTAAAGAATCGGACTAAGTCGTTGAAATGGATGTT
AGTTACTTTAGAACTCGCTT

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MLRRIWAVVVKELRQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVNLSDSAYSRALVKAVEATQVVDFKHRY
LSAAEADAAITRGEVKAVLYLGADLDERLVRHPAFAGQAYFAEPVGQWLVDGSDTVVASTIRSLRQMPLDEIAGRAVKSN
PPSFEVVQYFNPEQRSVVNIVPGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKITPYVLVGFVQLA
IILSAGHLLFAVPIRGGLDSIALAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPSILLSGFMFPYEAMPVAAQWI
AEALPATHFMRMSRAIVLRDAEVSDLQFDALWMIGFTCLGLLVASLRFSKRLD

Sequences:

>Translated_373_residues
MLRRIWAVVVKELRQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVNLSDSAYSRALVKAVEATQVVDFKHRY
LSAAEADAAITRGEVKAVLYLGADLDERLVRHPAFAGQAYFAEPVGQWLVDGSDTVVASTIRSLRQMPLDEIAGRAVKSN
PPSFEVVQYFNPEQRSVVNIVPGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKITPYVLVGFVQLA
IILSAGHLLFAVPIRGGLDSIALAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPSILLSGFMFPYEAMPVAAQWI
AEALPATHFMRMSRAIVLRDAEVSDLQFDALWMIGFTCLGLLVASLRFSKRLD
>Mature_373_residues
MLRRIWAVVVKELRQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVNLSDSAYSRALVKAVEATQVVDFKHRY
LSAAEADAAITRGEVKAVLYLGADLDERLVRHPAFAGQAYFAEPVGQWLVDGSDTVVASTIRSLRQMPLDEIAGRAVKSN
PPSFEVVQYFNPEQRSVVNIVPGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKITPYVLVGFVQLA
IILSAGHLLFAVPIRGGLDSIALAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPSILLSGFMFPYEAMPVAAQWI
AEALPATHFMRMSRAIVLRDAEVSDLQFDALWMIGFTCLGLLVASLRFSKRLD

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=354, Percent_Identity=29.3785310734463, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1787010, Length=359, Percent_Identity=26.4623955431755, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI48994943, Length=356, Percent_Identity=25.561797752809, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI226510979, Length=387, Percent_Identity=27.390180878553, Blast_Score=96, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24650855, Length=393, Percent_Identity=22.64631043257, Blast_Score=85, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24650853, Length=393, Percent_Identity=23.1552162849873, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 41121; Mature: 41121

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRRIWAVVVKELRQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVNLSDSAY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHH
SRALVKAVEATQVVDFKHRYLSAAEADAAITRGEVKAVLYLGADLDERLVRHPAFAGQAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHCCCCCCCHH
FAEPVGQWLVDGSDTVVASTIRSLRQMPLDEIAGRAVKSNPPSFEVVQYFNPEQRSVVNI
HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHH
VPGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKITPYVLVGFVQLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
IILSAGHLLFAVPIRGGLDSIALAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPS
HHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLSGFMFPYEAMPVAAQWIAEALPATHFMRMSRAIVLRDAEVSDLQFDALWMIGFTCLG
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHH
LLVASLRFSKRLD
HHHHHHHHHHCCC
>Mature Secondary Structure
MLRRIWAVVVKELRQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVNLSDSAY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHH
SRALVKAVEATQVVDFKHRYLSAAEADAAITRGEVKAVLYLGADLDERLVRHPAFAGQAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHCCCCCCCHH
FAEPVGQWLVDGSDTVVASTIRSLRQMPLDEIAGRAVKSNPPSFEVVQYFNPEQRSVVNI
HHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHH
VPGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKITPYVLVGFVQLA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
IILSAGHLLFAVPIRGGLDSIALAAMLFICASLTLGLVISTIAKTQLQSMQMTVFILLPS
HHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLSGFMFPYEAMPVAAQWIAEALPATHFMRMSRAIVLRDAEVSDLQFDALWMIGFTCLG
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHH
LLVASLRFSKRLD
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]