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The map label for this gene is dsdX [C]

Identifier: 117921125

GI number: 117921125

Start: 3209402

End: 3210760

Strand: Direct

Name: dsdX [C]

Synonym: Shewana3_2684

Alternate gene names: 117921125

Gene position: 3209402-3210760 (Clockwise)

Preceding gene: 117921124

Following gene: 117921126

Centisome position: 64.55

GC content: 51.88

Gene sequence:

>1359_bases
ATGAACTTAGTGCTCATCCTCATCGGCGTGATTGCATTTATTGTTATCGCGACCTCAAAATTTAAGCTCCATCCGTTTTT
AACCTTAATTCTGGCCGCCTTTATCGCCGCCTTCGCCTACGGTTTACCGAGTGGCGATATTGCCAAAACCATCACCACTG
GCTTTGGTAATATCCTCGGCTATATCGGTCTGGTGATCGTGTTAGGTACCATTATCGGTATCATCCTCGAAAAGAGCGGC
GCCGCCATTACCATGGCGGACGTGGTGATCAAAGTCTTGGGCAAACGCTTCCCCACACTCACTATGTCCATCATCGGTTA
TTTAGTGTCGATTCCGGTGTTTTGTGACTCGGGTTTCGTGATTTTAAACTCGCTTAAACAATCCATGGCCAACCGCATGA
AGGTCTCGAGCGTGTCCATGAGCGTAGCGTTAGCCACAGGTCTTTATGCCACTCACACCTTTGTGCCCCCCACACCAGGC
CCTATCGCCGCGGCGGGTAACTTAGGGCTAGAGTCCAACTTAGGCCTAGTGATTGGTGTCGGTTTATTGGTTGCAGCCGT
TGCCGCGCTCGCGGGGATGTTCTGGGCGAACCGTTTTGCCAGTGTTGAACCCGATGGCGAAGGCGCAGAAGAACTCAAAG
CTCAAGCTGCTGATTTTGAAGCCTTAAAACAAAGCTATGGCACTCTCCCTAGCCCATTAAAAGCATTTGCACCGATTTTT
GTGCCTATCCTATTAATTTGCTTAGGCTCTATCGCCAACTTCCCGTCTGCACCACTCGGCAAAGAAGGTCTATTCAGCCT
GTTAGTCTTCCTTGGTCAACCCGTTAACGCCCTGCTTATCGGTCTTTTCCTGTCACTACTGTTACTGAAAAGCGATAACA
AGATTGCCGAGTTTAGCGAGCGCATCAGCCAAGGCCTCGTTGCCGCAGCACCGATTATTTTGATCACTGGTGCCGGTGGT
GCCTTTGGCGCCGTGTTAAAAGCCACGCCTATCGGTGACTTCCTCGGTAGCTCACTGTCGGCGCTAGGAGTGGGTATCTT
TATGCCCTTTATCGTCGCCGCCGCGCTGAAATCGGCTCAAGGTTCATCCACCGTCGCCCTAGTGGCCACCTCGGCTCTAG
TCGCGCCAATGCTGGGCGATATTGGCCTTGGTAGCGATATGGGACGCGTGCTAACCGTGATGGCCATTGGTGCTGGCGCC
ATGACAGTCTCCCACGCCAACGACAGCTTCTTCTGGGTGGTGACTCAATTTAGCCGCATGAGCGTTAAACAAGCCTATAA
AGCACAAACCATGGCGACCCTTATCCAAGGCGTCACCGCAATGCTGACCGTGTATGTACTAAGCTTAGTGCTGCTCTAA

Upstream 100 bases:

>100_bases
AAAGCAACCTTTATTTGACTTGGGGTTAAATAAAGACTGCGCCCTACAAAAACAGCCAAAACCACTTAAGAACTTCAGCC
AAGACTGAACGGGACAACCT

Downstream 100 bases:

>100_bases
GCCGCACTTTTCTCATCCTTGGGCGCATCCGTGCGCCCAAAAAGCTGTAGGATTTTGAATGAAGATAGTTATCGCCCCCG
ATTCCTTTAAAGAGAGCTTA

Product: gluconate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MNLVLILIGVIAFIVIATSKFKLHPFLTLILAAFIAAFAYGLPSGDIAKTITTGFGNILGYIGLVIVLGTIIGIILEKSG
AAITMADVVIKVLGKRFPTLTMSIIGYLVSIPVFCDSGFVILNSLKQSMANRMKVSSVSMSVALATGLYATHTFVPPTPG
PIAAAGNLGLESNLGLVIGVGLLVAAVAALAGMFWANRFASVEPDGEGAEELKAQAADFEALKQSYGTLPSPLKAFAPIF
VPILLICLGSIANFPSAPLGKEGLFSLLVFLGQPVNALLIGLFLSLLLLKSDNKIAEFSERISQGLVAAAPIILITGAGG
AFGAVLKATPIGDFLGSSLSALGVGIFMPFIVAAALKSAQGSSTVALVATSALVAPMLGDIGLGSDMGRVLTVMAIGAGA
MTVSHANDSFFWVVTQFSRMSVKQAYKAQTMATLIQGVTAMLTVYVLSLVLL

Sequences:

>Translated_452_residues
MNLVLILIGVIAFIVIATSKFKLHPFLTLILAAFIAAFAYGLPSGDIAKTITTGFGNILGYIGLVIVLGTIIGIILEKSG
AAITMADVVIKVLGKRFPTLTMSIIGYLVSIPVFCDSGFVILNSLKQSMANRMKVSSVSMSVALATGLYATHTFVPPTPG
PIAAAGNLGLESNLGLVIGVGLLVAAVAALAGMFWANRFASVEPDGEGAEELKAQAADFEALKQSYGTLPSPLKAFAPIF
VPILLICLGSIANFPSAPLGKEGLFSLLVFLGQPVNALLIGLFLSLLLLKSDNKIAEFSERISQGLVAAAPIILITGAGG
AFGAVLKATPIGDFLGSSLSALGVGIFMPFIVAAALKSAQGSSTVALVATSALVAPMLGDIGLGSDMGRVLTVMAIGAGA
MTVSHANDSFFWVVTQFSRMSVKQAYKAQTMATLIQGVTAMLTVYVLSLVLL
>Mature_452_residues
MNLVLILIGVIAFIVIATSKFKLHPFLTLILAAFIAAFAYGLPSGDIAKTITTGFGNILGYIGLVIVLGTIIGIILEKSG
AAITMADVVIKVLGKRFPTLTMSIIGYLVSIPVFCDSGFVILNSLKQSMANRMKVSSVSMSVALATGLYATHTFVPPTPG
PIAAAGNLGLESNLGLVIGVGLLVAAVAALAGMFWANRFASVEPDGEGAEELKAQAADFEALKQSYGTLPSPLKAFAPIF
VPILLICLGSIANFPSAPLGKEGLFSLLVFLGQPVNALLIGLFLSLLLLKSDNKIAEFSERISQGLVAAAPIILITGAGG
AFGAVLKATPIGDFLGSSLSALGVGIFMPFIVAAALKSAQGSSTVALVATSALVAPMLGDIGLGSDMGRVLTVMAIGAGA
MTVSHANDSFFWVVTQFSRMSVKQAYKAQTMATLIQGVTAMLTVYVLSLVLL

Specific function: Probable Permease For An Unknown Substrate. [C]

COG id: COG2610

COG function: function code GE; H+/gluconate symporter and related permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gntP permease family [H]

Homologues:

Organism=Escherichia coli, GI1788707, Length=452, Percent_Identity=33.1858407079646, Blast_Score=195, Evalue=6e-51,
Organism=Escherichia coli, GI1789097, Length=459, Percent_Identity=31.1546840958606, Blast_Score=171, Evalue=7e-44,
Organism=Escherichia coli, GI1790716, Length=448, Percent_Identity=28.125, Blast_Score=141, Evalue=8e-35,
Organism=Escherichia coli, GI48994935, Length=455, Percent_Identity=26.8131868131868, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI48994939, Length=453, Percent_Identity=28.2560706401766, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI2367370, Length=435, Percent_Identity=27.3563218390805, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790776, Length=458, Percent_Identity=25.1091703056769, Blast_Score=123, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003474 [H]

Pfam domain/function: PF02447 GntP_permease [H]

EC number: NA

Molecular weight: Translated: 46543; Mature: 46543

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLVLILIGVIAFIVIATSKFKLHPFLTLILAAFIAAFAYGLPSGDIAKTITTGFGNILG
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
YIGLVIVLGTIIGIILEKSGAAITMADVVIKVLGKRFPTLTMSIIGYLVSIPVFCDSGFV
HHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHH
ILNSLKQSMANRMKVSSVSMSVALATGLYATHTFVPPTPGPIAAAGNLGLESNLGLVIGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
GLLVAAVAALAGMFWANRFASVEPDGEGAEELKAQAADFEALKQSYGTLPSPLKAFAPIF
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VPILLICLGSIANFPSAPLGKEGLFSLLVFLGQPVNALLIGLFLSLLLLKSDNKIAEFSE
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
RISQGLVAAAPIILITGAGGAFGAVLKATPIGDFLGSSLSALGVGIFMPFIVAAALKSAQ
HHHHCHHHHCCEEEEECCCCHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCC
GSSTVALVATSALVAPMLGDIGLGSDMGRVLTVMAIGAGAMTVSHANDSFFWVVTQFSRM
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHHHH
SVKQAYKAQTMATLIQGVTAMLTVYVLSLVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNLVLILIGVIAFIVIATSKFKLHPFLTLILAAFIAAFAYGLPSGDIAKTITTGFGNILG
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
YIGLVIVLGTIIGIILEKSGAAITMADVVIKVLGKRFPTLTMSIIGYLVSIPVFCDSGFV
HHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHH
ILNSLKQSMANRMKVSSVSMSVALATGLYATHTFVPPTPGPIAAAGNLGLESNLGLVIGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
GLLVAAVAALAGMFWANRFASVEPDGEGAEELKAQAADFEALKQSYGTLPSPLKAFAPIF
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
VPILLICLGSIANFPSAPLGKEGLFSLLVFLGQPVNALLIGLFLSLLLLKSDNKIAEFSE
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
RISQGLVAAAPIILITGAGGAFGAVLKATPIGDFLGSSLSALGVGIFMPFIVAAALKSAQ
HHHHCHHHHCCEEEEECCCCHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCC
GSSTVALVATSALVAPMLGDIGLGSDMGRVLTVMAIGAGAMTVSHANDSFFWVVTQFSRM
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEHHHHHH
SVKQAYKAQTMATLIQGVTAMLTVYVLSLVLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]