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The map label for this gene is cdaR [H]

Identifier: 117921123

GI number: 117921123

Start: 3206661

End: 3207893

Strand: Direct

Name: cdaR [H]

Synonym: Shewana3_2682

Alternate gene names: 117921123

Gene position: 3206661-3207893 (Clockwise)

Preceding gene: 117921121

Following gene: 117921124

Centisome position: 64.49

GC content: 49.15

Gene sequence:

>1233_bases
ATGTACGTTTTGGATCAACACATCGCTAAACAAATTGTGAGTCGCACCATGAAAATCATTGGGCACAATATCAATGTGAT
GAATGGTCAGGGCGTGATCTTAGGTTCGGGCGATCCCAAACGTATTGGCTCGACCCACGAGGGCGCGCTGCTTGCCATCG
CCCAAAACCGCAATGTGGAACTGAGTGAAGAAGTGGCCTCTGGCTTATATGGCGTCAAACCCGGCATCAACTTACCCCTG
CATTATCAAGGGCAAATTATTGGGGTGATTGGTATTACTGGCGATCCGGCCGAGTTAACCCACTACGGCGAGCTGCTCAA
AATGACCGCCGAGATGATTGTCGAGCAAGCCAACCAGCAGGATCAGCAGCAGTGGGAAAATCGCCAGCGTGAGGAATTTA
TTCTGCAGTTGATTAAGGCGCAAACCGATGACGATGAACAATTGCATCGCTGGGCCAAGCAACTCGACATCGATATCAGT
CTGCCGCGAGTGGCCGCCATTATTGAAGTCAGTGAAAAACAATCCGCGCCTACCCAACACACATCCGCCGCGTTTTCGTC
ATTAGTCCAGAGCGAGCAAAATGCAGACGAGCGTAACCCCAGAGTCAGCGAAATCCTCAAGCAAGTGCTGCATTTGCTGC
AAAACCCCGATCGCGGCAACTTGATTGCCATGACCTCTATGTCGCAACTGGTGATCTTAAAACCCGCCTTTCTGGATGGT
AAACAATGGGATCCCGAGCTTGAAAACCAGCGTATCGATAAACTGCTGCAGCGCTTACCGGCACAGATGGATTTACATTT
TAAAATAGCCCTTGGGCATTTTTTCCCTGAAAAAGGCGGCATTGCCCGCTCCTACCAAACCGCGCAGGAAACCTTAAACT
TAGGCAAACAGCTTAACCCCGAGGGCACAAAATACCTGTTTGAAGACTACTCCTTGCAAGTGCTGTTATCGGGACTCAAG
CATGATTGGCGTGGTCAGGCGCTGGCCAGCCCCTACCAACAGCTAGCCAAGGCCGATAAAAATGGCCAGCTACGTAAGAC
TTTAGCCGCCTATATCACTCACTTTGGTGATGCCCAGCAATGTGCTAATGCATTGTTTATTCACCGAAATACCCTAAGGT
ATCGGTTAGATAAAATTCAGCAACTCACCAAGAGTGATATCCATTCTCTCCACGGATTGTTAAGTCTTTATCTTGGGCAG
TTGATAGATACCTCAAATTACCGACTCGAGTAG

Upstream 100 bases:

>100_bases
ATTAAAAAACACCTGCCCTTTTCTCTTATTTGCCATTACCCTAACCAGATTGCCGCTTGCGCCAGCCCCTTTCTCAATCG
TTTGAAAACTAAGGTGAGTT

Downstream 100 bases:

>100_bases
AACCCCATATCATCGCTAGAGTAAAACTCAACATCAGCAGGCTTTAACTCAATGAATTAATTTAAATTAGCGAGTAATTA
TCACTCACACAAACTCAGGC

Product: CdaR family transcriptional regulator

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MYVLDQHIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVELSEEVASGLYGVKPGINLPL
HYQGQIIGVIGITGDPAELTHYGELLKMTAEMIVEQANQQDQQQWENRQREEFILQLIKAQTDDDEQLHRWAKQLDIDIS
LPRVAAIIEVSEKQSAPTQHTSAAFSSLVQSEQNADERNPRVSEILKQVLHLLQNPDRGNLIAMTSMSQLVILKPAFLDG
KQWDPELENQRIDKLLQRLPAQMDLHFKIALGHFFPEKGGIARSYQTAQETLNLGKQLNPEGTKYLFEDYSLQVLLSGLK
HDWRGQALASPYQQLAKADKNGQLRKTLAAYITHFGDAQQCANALFIHRNTLRYRLDKIQQLTKSDIHSLHGLLSLYLGQ
LIDTSNYRLE

Sequences:

>Translated_410_residues
MYVLDQHIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVELSEEVASGLYGVKPGINLPL
HYQGQIIGVIGITGDPAELTHYGELLKMTAEMIVEQANQQDQQQWENRQREEFILQLIKAQTDDDEQLHRWAKQLDIDIS
LPRVAAIIEVSEKQSAPTQHTSAAFSSLVQSEQNADERNPRVSEILKQVLHLLQNPDRGNLIAMTSMSQLVILKPAFLDG
KQWDPELENQRIDKLLQRLPAQMDLHFKIALGHFFPEKGGIARSYQTAQETLNLGKQLNPEGTKYLFEDYSLQVLLSGLK
HDWRGQALASPYQQLAKADKNGQLRKTLAAYITHFGDAQQCANALFIHRNTLRYRLDKIQQLTKSDIHSLHGLLSLYLGQ
LIDTSNYRLE
>Mature_410_residues
MYVLDQHIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVELSEEVASGLYGVKPGINLPL
HYQGQIIGVIGITGDPAELTHYGELLKMTAEMIVEQANQQDQQQWENRQREEFILQLIKAQTDDDEQLHRWAKQLDIDIS
LPRVAAIIEVSEKQSAPTQHTSAAFSSLVQSEQNADERNPRVSEILKQVLHLLQNPDRGNLIAMTSMSQLVILKPAFLDG
KQWDPELENQRIDKLLQRLPAQMDLHFKIALGHFFPEKGGIARSYQTAQETLNLGKQLNPEGTKYLFEDYSLQVLLSGLK
HDWRGQALASPYQQLAKADKNGQLRKTLAAYITHFGDAQQCANALFIHRNTLRYRLDKIQQLTKSDIHSLHGLLSLYLGQ
LIDTSNYRLE

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=400, Percent_Identity=43, Blast_Score=322, Evalue=3e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 46182; Mature: 46182

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVLDQHIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVE
CCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCHHCCCCCCCEEEEEECCCCCE
LSEEVASGLYGVKPGINLPLHYQGQIIGVIGITGDPAELTHYGELLKMTAEMIVEQANQQ
EHHHHHCCCCCCCCCCCCCEEECCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCHH
DQQQWENRQREEFILQLIKAQTDDDEQLHRWAKQLDIDISLPRVAAIIEVSEKQSAPTQH
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHEEHHHCCCCCHH
TSAAFSSLVQSEQNADERNPRVSEILKQVLHLLQNPDRGNLIAMTSMSQLVILKPAFLDG
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCCCC
KQWDPELENQRIDKLLQRLPAQMDLHFKIALGHFFPEKGGIARSYQTAQETLNLGKQLNP
CCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECHHCCCCCCCHHHHHHHHHHHHHCCCCCC
EGTKYLFEDYSLQVLLSGLKHDWRGQALASPYQQLAKADKNGQLRKTLAAYITHFGDAQQ
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH
CANALFIHRNTLRYRLDKIQQLTKSDIHSLHGLLSLYLGQLIDTSNYRLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MYVLDQHIAKQIVSRTMKIIGHNINVMNGQGVILGSGDPKRIGSTHEGALLAIAQNRNVE
CCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCCCCHHCCCCCCCEEEEEECCCCCE
LSEEVASGLYGVKPGINLPLHYQGQIIGVIGITGDPAELTHYGELLKMTAEMIVEQANQQ
EHHHHHCCCCCCCCCCCCCEEECCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCHH
DQQQWENRQREEFILQLIKAQTDDDEQLHRWAKQLDIDISLPRVAAIIEVSEKQSAPTQH
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHEEHHHCCCCCHH
TSAAFSSLVQSEQNADERNPRVSEILKQVLHLLQNPDRGNLIAMTSMSQLVILKPAFLDG
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCCCC
KQWDPELENQRIDKLLQRLPAQMDLHFKIALGHFFPEKGGIARSYQTAQETLNLGKQLNP
CCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECHHCCCCCCCHHHHHHHHHHHHHCCCCCC
EGTKYLFEDYSLQVLLSGLKHDWRGQALASPYQQLAKADKNGQLRKTLAAYITHFGDAQQ
CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH
CANALFIHRNTLRYRLDKIQQLTKSDIHSLHGLLSLYLGQLIDTSNYRLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]