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The map label for this gene is ycjF [C]

Identifier: 117921085

GI number: 117921085

Start: 3157848

End: 3159050

Strand: Reverse

Name: ycjF [C]

Synonym: Shewana3_2644

Alternate gene names: 117921085

Gene position: 3159050-3157848 (Counterclockwise)

Preceding gene: 117921086

Following gene: 117921084

Centisome position: 63.53

GC content: 49.88

Gene sequence:

>1203_bases
ATGAGTTTAGATTCGTTATCAGCTTCAAGTGAGTCAGAGACAAACGGGCTCGATAAGTCAGTGTCTGAAAATACACTTGA
AAGCCAACCGCTCAAAAAACAACAAGTATTTGATTCTGACAAGGTCAAACTTCAGTCTGCTTCCGATGAGCTTAAGAGTG
CCCAAGCCTTTGCACCACAGACACCCTTAAAAGCGGTGGATGAGGTTGTCGATGATGCCTTAGCGGCCCATCCGCAAGCA
TTGGATGTGTCGTCCATTCGGCCAACACTGCATCAATCTCGCCGTTGGTCTTGGTTGGCGCGCTTTTCCGTTTTTGGGTT
ATTGCTACTGGTTTTAGTGCAAACGGGATTAGGATTGCGGGACGCTTGGTTAGCAAGCCCTTGGTTATTTAGCTTTTATG
GCGCAGTACTCGGTTTAGTCGGCAGCTGGGCTATGGTCGGAGCCTTGGGCGAATACCGTAAATTAAAACGCCTCAAGCAG
GTTGCCGATACGCAAGAGTCCGGCGCAAGACTTGCTCTCAGTATGCAAATGGGGGAGGCCGATGGTTTTATCAATAACAT
AGTGCGCCATTATCCCGATAGTCAGGGGCTACAGCGGCTGCGTCAGTCGCTCAAAGATGAACACAATGACGCCGAAAAAG
TGCTGCTATTTGAGGACTTAGTGCTGACTGAGCGGGATGAACTCGCGAAAAAAATCGTCCGTCGATACGCGGCCGAGTCT
GCAGTGTTGCTTGCCGCGAGTCCACTTGCTGCATTGGATATGGCCATTATTCTTTGGCGCAATCAACGCATGCTGCGGGA
TGTCGCCGCCTGTTACGGGATAGAGTTAGGCTATTGGAGCCGGATTAAACTCATTCGCAGCATCATCATGAACATCATCT
ATGCCGGTACCAGCGAGTTAGTGACCGATTTGGGTACCCAATTGCTGTCGGTCGAGATGACGGGGAAATTATCCGCACGG
CTTGCCCAGGGCTTAGGCGGCGGACTGCTCACGGCACGTTTAGGTTATCAAGCCATGGCGCTGTGTCGACCTATTCAGTT
TAGGGAGGAGCAGCGCCCCAAATTGTCCAAAGTTCATCAAGAGTTGTTGATTGAGCTTAAACAGTTTGCCGGTAAGTTAT
TGACTAAAGACGGACGGGATGCGCTTAAGAGTCAATTAGAGGCAGCGGAGCTTAAAACTGGCTCAACACCCAAAGAGAAA
TAA

Upstream 100 bases:

>100_bases
TTGCTCCGCCAAATAACAGCAATGTGGATCCATCTGCGGTGCATTTTGACCATATCCGTCTCGATCACCTTCTGCAGTAC
CTTGTGGGGGATAAACTGGA

Downstream 100 bases:

>100_bases
CCTAGCCGAATGCACAACACTGCGAGTGCACTTTAGGCTAAATGCTAATGCGCTAATGACCCTGTTATTAGCGCATTTTT
TATTGCTGATTGTCGGCCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MSLDSLSASSESETNGLDKSVSENTLESQPLKKQQVFDSDKVKLQSASDELKSAQAFAPQTPLKAVDEVVDDALAAHPQA
LDVSSIRPTLHQSRRWSWLARFSVFGLLLLVLVQTGLGLRDAWLASPWLFSFYGAVLGLVGSWAMVGALGEYRKLKRLKQ
VADTQESGARLALSMQMGEADGFINNIVRHYPDSQGLQRLRQSLKDEHNDAEKVLLFEDLVLTERDELAKKIVRRYAAES
AVLLAASPLAALDMAIILWRNQRMLRDVAACYGIELGYWSRIKLIRSIIMNIIYAGTSELVTDLGTQLLSVEMTGKLSAR
LAQGLGGGLLTARLGYQAMALCRPIQFREEQRPKLSKVHQELLIELKQFAGKLLTKDGRDALKSQLEAAELKTGSTPKEK

Sequences:

>Translated_400_residues
MSLDSLSASSESETNGLDKSVSENTLESQPLKKQQVFDSDKVKLQSASDELKSAQAFAPQTPLKAVDEVVDDALAAHPQA
LDVSSIRPTLHQSRRWSWLARFSVFGLLLLVLVQTGLGLRDAWLASPWLFSFYGAVLGLVGSWAMVGALGEYRKLKRLKQ
VADTQESGARLALSMQMGEADGFINNIVRHYPDSQGLQRLRQSLKDEHNDAEKVLLFEDLVLTERDELAKKIVRRYAAES
AVLLAASPLAALDMAIILWRNQRMLRDVAACYGIELGYWSRIKLIRSIIMNIIYAGTSELVTDLGTQLLSVEMTGKLSAR
LAQGLGGGLLTARLGYQAMALCRPIQFREEQRPKLSKVHQELLIELKQFAGKLLTKDGRDALKSQLEAAELKTGSTPKEK
>Mature_399_residues
SLDSLSASSESETNGLDKSVSENTLESQPLKKQQVFDSDKVKLQSASDELKSAQAFAPQTPLKAVDEVVDDALAAHPQAL
DVSSIRPTLHQSRRWSWLARFSVFGLLLLVLVQTGLGLRDAWLASPWLFSFYGAVLGLVGSWAMVGALGEYRKLKRLKQV
ADTQESGARLALSMQMGEADGFINNIVRHYPDSQGLQRLRQSLKDEHNDAEKVLLFEDLVLTERDELAKKIVRRYAAESA
VLLAASPLAALDMAIILWRNQRMLRDVAACYGIELGYWSRIKLIRSIIMNIIYAGTSELVTDLGTQLLSVEMTGKLSARL
AQGLGGGLLTARLGYQAMALCRPIQFREEQRPKLSKVHQELLIELKQFAGKLLTKDGRDALKSQLEAAELKTGSTPKEK

Specific function: Unknown

COG id: COG3768

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0283 family [H]

Homologues:

Organism=Escherichia coli, GI1787582, Length=355, Percent_Identity=34.9295774647887, Blast_Score=169, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021147
- InterPro:   IPR006507 [H]

Pfam domain/function: PF05128 DUF697 [H]

EC number: NA

Molecular weight: Translated: 44236; Mature: 44104

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDSLSASSESETNGLDKSVSENTLESQPLKKQQVFDSDKVKLQSASDELKSAQAFAPQ
CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
TPLKAVDEVVDDALAAHPQALDVSSIRPTLHQSRRWSWLARFSVFGLLLLVLVQTGLGLR
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
DAWLASPWLFSFYGAVLGLVGSWAMVGALGEYRKLKRLKQVADTQESGARLALSMQMGEA
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCEEEEEEECCCH
DGFINNIVRHYPDSQGLQRLRQSLKDEHNDAEKVLLFEDLVLTERDELAKKIVRRYAAES
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLLAASPLAALDMAIILWRNQRMLRDVAACYGIELGYWSRIKLIRSIIMNIIYAGTSEL
HHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHH
VTDLGTQLLSVEMTGKLSARLAQGLGGGLLTARLGYQAMALCRPIQFREEQRPKLSKVHQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHH
ELLIELKQFAGKLLTKDGRDALKSQLEAAELKTGSTPKEK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SLDSLSASSESETNGLDKSVSENTLESQPLKKQQVFDSDKVKLQSASDELKSAQAFAPQ
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
TPLKAVDEVVDDALAAHPQALDVSSIRPTLHQSRRWSWLARFSVFGLLLLVLVQTGLGLR
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
DAWLASPWLFSFYGAVLGLVGSWAMVGALGEYRKLKRLKQVADTQESGARLALSMQMGEA
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCEEEEEEECCCH
DGFINNIVRHYPDSQGLQRLRQSLKDEHNDAEKVLLFEDLVLTERDELAKKIVRRYAAES
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLLAASPLAALDMAIILWRNQRMLRDVAACYGIELGYWSRIKLIRSIIMNIIYAGTSEL
HHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHH
VTDLGTQLLSVEMTGKLSARLAQGLGGGLLTARLGYQAMALCRPIQFREEQRPKLSKVHQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHH
ELLIELKQFAGKLLTKDGRDALKSQLEAAELKTGSTPKEK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]