| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is btuB [H]
Identifier: 117921068
GI number: 117921068
Start: 3131779
End: 3134592
Strand: Reverse
Name: btuB [H]
Synonym: Shewana3_2627
Alternate gene names: 117921068
Gene position: 3134592-3131779 (Counterclockwise)
Preceding gene: 117921069
Following gene: 117921067
Centisome position: 63.04
GC content: 41.33
Gene sequence:
>2814_bases ATGCATAAGAATAACTTTTTAGCCAAGTCTGTGCGTTTCGCATTGATTGGTGGTGTGGCTGCAACAGCCCTAAACGTGCC ATTGGTAGTGGCTGCTGATGAAGCTAGCGCCGAGAAAGTAGAACGTATTGAAGTAACTGGTTCACGTATTAAACGCACTG ATATGGAAGCTGCAAGCCCTGTATTGGTAATGAACCGTGATGAAATCGCTGCAACAGGCCTAGTGAGCTTAGGTGATATT TTACAAACTATTCCTTCTGCAGGTGCAGCACTTAATACCGCGTTTAACAACGGCGGTAACGGTTCTACTAACATGGACCT GCGTAATCTAGGTGCTCAACGTCTGTTGGTTTTAGTGAATGGTCGCCGTTGGATTTCATCTCTAGGTTCAACCGTAGATA TGAATACAATTCCAACAGCGGCTGTAGAACGTATTGAAGTTTTGAAAGACGGTGCTTCAGCGGTATACGGTTCAGATGCT ATAGCTGGTGTGGTTAACATCATTACTCGAAAAGATTTCGAAGGCGTTGAAGTTTCAGTTTATGGTGGTGAAAACTTAAG TGAAGGCGACGGTCGTCAATATACAGCTGACCTTACTTTTGGTGTCTCTGGTGAAAAAGGTGGCTTGTTATTTAACATGA GCCATGTAACTCAACAGCCAATTTGGGCTGGCGACCGCGATATATCTTCAGTTGGTACTAGTAGTACTACGGAAAATACT CGTTTGAGAGTTGATCCCACGACTTTAAATCAAGCAAACCAAGATGCTTTAGCGGCTGCTGGCTACACGATTAGAAGCAA CGGATTGTATGATCTTATGTCTTTACCTGGTACAGGTGCTGATGTTGGCTTAGATAAGTTCCGTAACCGTGCGGGAGATG TTTATAACTATGCTCCTGATAACTATCTGGTAACACCTCAAAATCGTAACGCATTTTATGTTCAAGGTTATTACGACCTT GCTGATAATTTACGTTTAGTGAGTGACTTTATGATGACAAACCGTAAGTCATCTCAAGAACTTGCACCAATGCCTGTTAC GCTAGGTGCATCTTTTGGTGCTGCAGCTAGCCGCGTAGATATACATGCTGATAATATTTACAATCCGTTTGGTGAAACTT TATATGGTGACAGTGCTAGAGCTGTTGCAAACGGAGTTGTAAGCGATCCTTTAGATTACACTCCATATGCTCTACAACGT CGTATGTTAGAGGCTGGACCACGTCGCTATGAACAAAACGATATGACTTATCGTGCGATGGTTGGTCTAGAGGGAAACAT AACTGATAGTTGGAGTTGGAGTGCACATTATATTTACGGTCAAAACAGCCAAGATGAGTTAACAACTGGCTTATTAAATT TAACCCGTATTAACCAAGCTCTCGGTGCTAATTGTAACGCAAGCACTGCTTGTACACCTTTAAACCTTTTTGGTGGTCCA GGAAGCATCACCAACGACATGATTGATTACATTACTTTCGATTCAGTTGGTCGTTCCGGTCTGACGATGAAAGATTATGC ATTCAACATTTCAGGTGATCTTTTCGACTTACCAGCTGGTAGCTTAGGTGTCGCAATTGGTTTAGAGCGTCGTGAAGAGA CTGGTTATGATACACCAGACCCATTAACTGTAACTGGAGAGTCTTCTGGTAACCAACGTGACGCAACTGCTGGTGGTTTC AGATTAGATGAGGCATATGTTGAACTCTCAATCCCTGTGCTAGAAAGTTTAACTATCACGCCTGCAACGCGTTTCTCAGA CCATGATGTATATGGTAATAACACTAGTTCAAAAGTGGGTGCAGAGTTCCGCCCTATGGATGACTTGTTATTACGTGCAA CCTGGGCTGAGGGATATCGTGCTCCTTCTATTTCGGATCTATATGCAGGTAATGCGGATTCATACCCAAGCTGGACTGAC CCTTGTAATACTCGTGATGATGAAGGTAATGTATTAGATATTTCTGGTAAACCTGGATGTTCTGCTGTACCAGATGGGTA TCGTCAAGCGAATACGCAGATCCGTATTACACAAGTATCTTCTCCAGATTTAAAACCAGAAACGTCTGAATCTGTAACTG CTGGTTTTGTATATAACCCATCTTGGTTAGAAGGAGCTGAGTTAACTTTAGATTATTATAACATTAAAGTTAAAGATGCA ATTGGTCGCTATGGATACACTCGTATCGCAACAGAATGTGCTGAAGGTACGAATCCATCATCTTGTAATGCCATTGACCG CGATCCATTAGGTAACATCGTTGATTTACGCAATTATTTATTAAATGCAAACAACTATGATGTTAGTGGTATCGACATGT ATACTGGCTACCGTTTTGAAACAGGTTTTGGAAGTTTTAAAACCTCTCTTGACATGGCCTATGTCATCGAGAACAACTTT AACGGTTATGATCAAGTCGGGCAGCAATATGGCGATGGTGGTTATCCTCGCATTAAAGCAAACTTCTATATTGATTGGGC TATGGGAGATTGGGATGCCCATTGGAAAACCCGTTATGTACACAGCATGATGAGCAATTACTATGTTGATGGTGTGTATG ACTATTACGGTATACCTGAAAGCGATTATACCAAAGAGTTTGATGCTTATATGGTGCACAATATTTCTGTCGGATATTCA TTTGCTGAATATAATACTAACGTAAGTTTAGGTATTAATAACTTATTTGCGGAGAAACCCGAATCAGAATACATCAACAA TGACTTAGCTATGTCTACAAACAACTTCTCTGTAACTGAGTATGATGTAAACATGGATCGCTTTGTTTACTTACGTGCAA CTGTGAAGTTTTAA
Upstream 100 bases:
>100_bases TTTCGCTGAGTGCTCCGTATTTTCGTAGTACTCCTGTTTGAAACTGCTTATTAAATAAGCGGATTATAATAAAGACATAA TATGTCCAGGGAGATAGACA
Downstream 100 bases:
>100_bases TGTTAATACAAAAGATTAATTCTTAGTTTGACAAGACCAACATATAAAAAGGCTTACTATGTAGTAAGCCTTTTTTTCGG TAGATTCAGTAGGAATTATT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 937; Mature: 937
Protein sequence:
>937_residues MHKNNFLAKSVRFALIGGVAATALNVPLVVAADEASAEKVERIEVTGSRIKRTDMEAASPVLVMNRDEIAATGLVSLGDI LQTIPSAGAALNTAFNNGGNGSTNMDLRNLGAQRLLVLVNGRRWISSLGSTVDMNTIPTAAVERIEVLKDGASAVYGSDA IAGVVNIITRKDFEGVEVSVYGGENLSEGDGRQYTADLTFGVSGEKGGLLFNMSHVTQQPIWAGDRDISSVGTSSTTENT RLRVDPTTLNQANQDALAAAGYTIRSNGLYDLMSLPGTGADVGLDKFRNRAGDVYNYAPDNYLVTPQNRNAFYVQGYYDL ADNLRLVSDFMMTNRKSSQELAPMPVTLGASFGAAASRVDIHADNIYNPFGETLYGDSARAVANGVVSDPLDYTPYALQR RMLEAGPRRYEQNDMTYRAMVGLEGNITDSWSWSAHYIYGQNSQDELTTGLLNLTRINQALGANCNASTACTPLNLFGGP GSITNDMIDYITFDSVGRSGLTMKDYAFNISGDLFDLPAGSLGVAIGLERREETGYDTPDPLTVTGESSGNQRDATAGGF RLDEAYVELSIPVLESLTITPATRFSDHDVYGNNTSSKVGAEFRPMDDLLLRATWAEGYRAPSISDLYAGNADSYPSWTD PCNTRDDEGNVLDISGKPGCSAVPDGYRQANTQIRITQVSSPDLKPETSESVTAGFVYNPSWLEGAELTLDYYNIKVKDA IGRYGYTRIATECAEGTNPSSCNAIDRDPLGNIVDLRNYLLNANNYDVSGIDMYTGYRFETGFGSFKTSLDMAYVIENNF NGYDQVGQQYGDGGYPRIKANFYIDWAMGDWDAHWKTRYVHSMMSNYYVDGVYDYYGIPESDYTKEFDAYMVHNISVGYS FAEYNTNVSLGINNLFAEKPESEYINNDLAMSTNNFSVTEYDVNMDRFVYLRATVKF
Sequences:
>Translated_937_residues MHKNNFLAKSVRFALIGGVAATALNVPLVVAADEASAEKVERIEVTGSRIKRTDMEAASPVLVMNRDEIAATGLVSLGDI LQTIPSAGAALNTAFNNGGNGSTNMDLRNLGAQRLLVLVNGRRWISSLGSTVDMNTIPTAAVERIEVLKDGASAVYGSDA IAGVVNIITRKDFEGVEVSVYGGENLSEGDGRQYTADLTFGVSGEKGGLLFNMSHVTQQPIWAGDRDISSVGTSSTTENT RLRVDPTTLNQANQDALAAAGYTIRSNGLYDLMSLPGTGADVGLDKFRNRAGDVYNYAPDNYLVTPQNRNAFYVQGYYDL ADNLRLVSDFMMTNRKSSQELAPMPVTLGASFGAAASRVDIHADNIYNPFGETLYGDSARAVANGVVSDPLDYTPYALQR RMLEAGPRRYEQNDMTYRAMVGLEGNITDSWSWSAHYIYGQNSQDELTTGLLNLTRINQALGANCNASTACTPLNLFGGP GSITNDMIDYITFDSVGRSGLTMKDYAFNISGDLFDLPAGSLGVAIGLERREETGYDTPDPLTVTGESSGNQRDATAGGF RLDEAYVELSIPVLESLTITPATRFSDHDVYGNNTSSKVGAEFRPMDDLLLRATWAEGYRAPSISDLYAGNADSYPSWTD PCNTRDDEGNVLDISGKPGCSAVPDGYRQANTQIRITQVSSPDLKPETSESVTAGFVYNPSWLEGAELTLDYYNIKVKDA IGRYGYTRIATECAEGTNPSSCNAIDRDPLGNIVDLRNYLLNANNYDVSGIDMYTGYRFETGFGSFKTSLDMAYVIENNF NGYDQVGQQYGDGGYPRIKANFYIDWAMGDWDAHWKTRYVHSMMSNYYVDGVYDYYGIPESDYTKEFDAYMVHNISVGYS FAEYNTNVSLGINNLFAEKPESEYINNDLAMSTNNFSVTEYDVNMDRFVYLRATVKF >Mature_937_residues MHKNNFLAKSVRFALIGGVAATALNVPLVVAADEASAEKVERIEVTGSRIKRTDMEAASPVLVMNRDEIAATGLVSLGDI LQTIPSAGAALNTAFNNGGNGSTNMDLRNLGAQRLLVLVNGRRWISSLGSTVDMNTIPTAAVERIEVLKDGASAVYGSDA IAGVVNIITRKDFEGVEVSVYGGENLSEGDGRQYTADLTFGVSGEKGGLLFNMSHVTQQPIWAGDRDISSVGTSSTTENT RLRVDPTTLNQANQDALAAAGYTIRSNGLYDLMSLPGTGADVGLDKFRNRAGDVYNYAPDNYLVTPQNRNAFYVQGYYDL ADNLRLVSDFMMTNRKSSQELAPMPVTLGASFGAAASRVDIHADNIYNPFGETLYGDSARAVANGVVSDPLDYTPYALQR RMLEAGPRRYEQNDMTYRAMVGLEGNITDSWSWSAHYIYGQNSQDELTTGLLNLTRINQALGANCNASTACTPLNLFGGP GSITNDMIDYITFDSVGRSGLTMKDYAFNISGDLFDLPAGSLGVAIGLERREETGYDTPDPLTVTGESSGNQRDATAGGF RLDEAYVELSIPVLESLTITPATRFSDHDVYGNNTSSKVGAEFRPMDDLLLRATWAEGYRAPSISDLYAGNADSYPSWTD PCNTRDDEGNVLDISGKPGCSAVPDGYRQANTQIRITQVSSPDLKPETSESVTAGFVYNPSWLEGAELTLDYYNIKVKDA IGRYGYTRIATECAEGTNPSSCNAIDRDPLGNIVDLRNYLLNANNYDVSGIDMYTGYRFETGFGSFKTSLDMAYVIENNF NGYDQVGQQYGDGGYPRIKANFYIDWAMGDWDAHWKTRYVHSMMSNYYVDGVYDYYGIPESDYTKEFDAYMVHNISVGYS FAEYNTNVSLGINNLFAEKPESEYINNDLAMSTNNFSVTEYDVNMDRFVYLRATVKF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=171, Percent_Identity=32.1637426900585, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1788478, Length=166, Percent_Identity=29.5180722891566, Blast_Score=77, Evalue=5e-15,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 102368; Mature: 102368
Theoretical pI: Translated: 4.29; Mature: 4.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHKNNFLAKSVRFALIGGVAATALNVPLVVAADEASAEKVERIEVTGSRIKRTDMEAASP CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHEEEECCCHHHHCCHHHCCC VLVMNRDEIAATGLVSLGDILQTIPSAGAALNTAFNNGGNGSTNMDLRNLGAQRLLVLVN EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHCCCEEEEEEEC GRRWISSLGSTVDMNTIPTAAVERIEVLKDGASAVYGSDAIAGVVNIITRKDFEGVEVSV CHHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCCEEEEE YGGENLSEGDGRQYTADLTFGVSGEKGGLLFNMSHVTQQPIWAGDRDISSVGTSSTTENT ECCCCCCCCCCCEEEEEEEEECCCCCCCEEEEHHHHCCCCCCCCCCCHHHCCCCCCCCCC RLRVDPTTLNQANQDALAAAGYTIRSNGLYDLMSLPGTGADVGLDKFRNRAGDVYNYAPD EEEECCHHCCCCCCCHHHHCCEEEECCCCEEHHCCCCCCCCCCHHHHHHHCCCCEEECCC NYLVTPQNRNAFYVQGYYDLADNLRLVSDFMMTNRKSSQELAPMPVTLGASFGAAASRVD CEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCEEE IHADNIYNPFGETLYGDSARAVANGVVSDPLDYTPYALQRRMLEAGPRRYEQNDMTYRAM EECCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEE VGLEGNITDSWSWSAHYIYGQNSQDELTTGLLNLTRINQALGANCNASTACTPLNLFGGP EECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCC GSITNDMIDYITFDSVGRSGLTMKDYAFNISGDLFDLPAGSLGVAIGLERREETGYDTPD CCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEECCCCCEEEEEEEECHHHCCCCCCC PLTVTGESSGNQRDATAGGFRLDEAYVELSIPVLESLTITPATRFSDHDVYGNNTSSKVG CEEEECCCCCCCCCCCCCCEEEECEEEEEECCHHHCEEECCCCCCCCCCCCCCCCCCCCC AEFRPMDDLLLRATWAEGYRAPSISDLYAGNADSYPSWTDPCNTRDDEGNVLDISGKPGC CCCCCHHHHHHEEHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC SAVPDGYRQANTQIRITQVSSPDLKPETSESVTAGFVYNPSWLEGAELTLDYYNIKVKDA CCCCCCHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEEHH IGRYGYTRIATECAEGTNPSSCNAIDRDPLGNIVDLRNYLLNANNYDVSGIDMYTGYRFE HCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCEEEE TGFGSFKTSLDMAYVIENNFNGYDQVGQQYGDGGYPRIKANFYIDWAMGDWDAHWKTRYV CCCCCHHHCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCHHHHHHH HSMMSNYYVDGVYDYYGIPESDYTKEFDAYMVHNISVGYSFAEYNTNVSLGINNLFAEKP HHHHHCCEECCCHHHCCCCCCCCCCCCCEEEEEEEEECEEEEECCCEEEEEEHHHHCCCC ESEYINNDLAMSTNNFSVTEYDVNMDRFVYLRATVKF CHHHCCCCEEEECCCCEEEEEECCCCEEEEEEEEECC >Mature Secondary Structure MHKNNFLAKSVRFALIGGVAATALNVPLVVAADEASAEKVERIEVTGSRIKRTDMEAASP CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHEEEECCCHHHHCCHHHCCC VLVMNRDEIAATGLVSLGDILQTIPSAGAALNTAFNNGGNGSTNMDLRNLGAQRLLVLVN EEEEECCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHCCCEEEEEEEC GRRWISSLGSTVDMNTIPTAAVERIEVLKDGASAVYGSDAIAGVVNIITRKDFEGVEVSV CHHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCCEEEEE YGGENLSEGDGRQYTADLTFGVSGEKGGLLFNMSHVTQQPIWAGDRDISSVGTSSTTENT ECCCCCCCCCCCEEEEEEEEECCCCCCCEEEEHHHHCCCCCCCCCCCHHHCCCCCCCCCC RLRVDPTTLNQANQDALAAAGYTIRSNGLYDLMSLPGTGADVGLDKFRNRAGDVYNYAPD EEEECCHHCCCCCCCHHHHCCEEEECCCCEEHHCCCCCCCCCCHHHHHHHCCCCEEECCC NYLVTPQNRNAFYVQGYYDLADNLRLVSDFMMTNRKSSQELAPMPVTLGASFGAAASRVD CEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCEEE IHADNIYNPFGETLYGDSARAVANGVVSDPLDYTPYALQRRMLEAGPRRYEQNDMTYRAM EECCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEE VGLEGNITDSWSWSAHYIYGQNSQDELTTGLLNLTRINQALGANCNASTACTPLNLFGGP EECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCC GSITNDMIDYITFDSVGRSGLTMKDYAFNISGDLFDLPAGSLGVAIGLERREETGYDTPD CCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEECCCCCEEEEEEEECHHHCCCCCCC PLTVTGESSGNQRDATAGGFRLDEAYVELSIPVLESLTITPATRFSDHDVYGNNTSSKVG CEEEECCCCCCCCCCCCCCEEEECEEEEEECCHHHCEEECCCCCCCCCCCCCCCCCCCCC AEFRPMDDLLLRATWAEGYRAPSISDLYAGNADSYPSWTDPCNTRDDEGNVLDISGKPGC CCCCCHHHHHHEEHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC SAVPDGYRQANTQIRITQVSSPDLKPETSESVTAGFVYNPSWLEGAELTLDYYNIKVKDA CCCCCCHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEEEEHH IGRYGYTRIATECAEGTNPSSCNAIDRDPLGNIVDLRNYLLNANNYDVSGIDMYTGYRFE HCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCEEEE TGFGSFKTSLDMAYVIENNFNGYDQVGQQYGDGGYPRIKANFYIDWAMGDWDAHWKTRYV CCCCCHHHCCEEEEEEECCCCCHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCHHHHHHH HSMMSNYYVDGVYDYYGIPESDYTKEFDAYMVHNISVGYSFAEYNTNVSLGINNLFAEKP HHHHHCCEECCCHHHCCCCCCCCCCCCCEEEEEEEEECEEEEECCCEEEEEEHHHHCCCC ESEYINNDLAMSTNNFSVTEYDVNMDRFVYLRATVKF CHHHCCCCEEEECCCCEEEEEECCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA