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The map label for this gene is 117921038

Identifier: 117921038

GI number: 117921038

Start: 3101150

End: 3102292

Strand: Reverse

Name: 117921038

Synonym: Shewana3_2597

Alternate gene names: NA

Gene position: 3102292-3101150 (Counterclockwise)

Preceding gene: 117921040

Following gene: 117921033

Centisome position: 62.39

GC content: 48.47

Gene sequence:

>1143_bases
ATGGATCATAAAAAACGCGCCGCACTACTCACGACAGCCAGTTTTAAGGCGGTTTCTCTCTTATCACTCAGTGTCTTGAG
TGGCATTTCTGCGCCGGCAATGGCCAAGAATATCTTAGATAAATTGACGGTTGCCGAAGGCTTTAACGTAACTCTTTTTG
CTGATGATGTTGAAAATGCGCGTGAAATTGCCGTATCCGATAAAGGTATCGTCTATGCGGGCTCGATGAAGGCGGGGAAT
GTTTATGCCCTAATCGACCGTAACCAGGACGGCGTTGCCGATGAGAAAATCCTAGTTGCCTCAGGACTTAAGCTACCTTC
AGGTGTGGTCATCAAAGATGGCGATCTGTATGTCTCCGAAGTCGAGCGCATCATTCGATTCAAGGATATAGACAACAACT
TAAACTCACCCAAATTTGAGGTGGTGTTCGATGGCTTTCCAAGTGAAACCCACCATGGCTGGAAAGTGTTAGGGGTTTCA
CCGACAGGCGAGTTAATCATTCCGGTGGGCGTGCCCTGCAATGTGTGCGCGGAGAATGAACGCTATGGGCGCATTTTCTC
GCTTAATCTTGAGACCAAAAAATTAACGACGATTGCCCAAGGGGTTCGTAATTCCGTCGGGTTTGATTTTCAGCCTGGCA
CTCAAACCCTTTGGTTTAGCGATAATGGCCGCGACATGATGGGCGATGATATTCCTCCCTGCGAAATCAATAAGGTCAGT
TACTTGGGTGAACATTTTGGCTTTCCTTATGTGCATGCAGGTACGATTCTTGACCCTGAGTTTGGCCAAGGTAAAGATCC
TGCCAAATACACTGCACCGGCACTCTCCCTAGGGGCGCATGTTGCGCCGCTCGGCATTCATTTTTATTTGGGTAAACAGT
TCCCTAGCGACTATCAACAGCAGTTATTTGTGGCCGAGCATGGTTCGTGGAATCGCACTAAGAAAGCGGGTTATAAAGTG
GCCGTGGCAACGATTGAGCAAGGCAAGGTGGTGAAATACACCCCGTTTTTAACTGGCTTTATGCAGGATGAACAAACCTT
CGGTCGCCCAGTGGCGTTTGCCGAATTGGCCGATGGCAGTTTACTCGTATCGGATGATTATGCGGGGGCGATTTACCGTG
TGACTTATCCGCAGACAAAGTAG

Upstream 100 bases:

>100_bases
TGACATGCTAAATCAGGGGATTTGGTAATACGGTATATCTAAGGTAACGTAGGCCAATTAATTGTACGACAATAATTTTA
CCCTACTAGGATGCGAGTCA

Downstream 100 bases:

>100_bases
CCGATAGCTAAGGCTTAAACGTTAATCCGGCTGTTAAACCACTTAAAAAATAATGCGCGGGATAATCGAGTGAATTATCC
CGCGCATTTTTGTCTGTTCT

Product: L-sorbosone dehydrogenase (SNDH)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MDHKKRAALLTTASFKAVSLLSLSVLSGISAPAMAKNILDKLTVAEGFNVTLFADDVENAREIAVSDKGIVYAGSMKAGN
VYALIDRNQDGVADEKILVASGLKLPSGVVIKDGDLYVSEVERIIRFKDIDNNLNSPKFEVVFDGFPSETHHGWKVLGVS
PTGELIIPVGVPCNVCAENERYGRIFSLNLETKKLTTIAQGVRNSVGFDFQPGTQTLWFSDNGRDMMGDDIPPCEINKVS
YLGEHFGFPYVHAGTILDPEFGQGKDPAKYTAPALSLGAHVAPLGIHFYLGKQFPSDYQQQLFVAEHGSWNRTKKAGYKV
AVATIEQGKVVKYTPFLTGFMQDEQTFGRPVAFAELADGSLLVSDDYAGAIYRVTYPQTK

Sequences:

>Translated_380_residues
MDHKKRAALLTTASFKAVSLLSLSVLSGISAPAMAKNILDKLTVAEGFNVTLFADDVENAREIAVSDKGIVYAGSMKAGN
VYALIDRNQDGVADEKILVASGLKLPSGVVIKDGDLYVSEVERIIRFKDIDNNLNSPKFEVVFDGFPSETHHGWKVLGVS
PTGELIIPVGVPCNVCAENERYGRIFSLNLETKKLTTIAQGVRNSVGFDFQPGTQTLWFSDNGRDMMGDDIPPCEINKVS
YLGEHFGFPYVHAGTILDPEFGQGKDPAKYTAPALSLGAHVAPLGIHFYLGKQFPSDYQQQLFVAEHGSWNRTKKAGYKV
AVATIEQGKVVKYTPFLTGFMQDEQTFGRPVAFAELADGSLLVSDDYAGAIYRVTYPQTK
>Mature_380_residues
MDHKKRAALLTTASFKAVSLLSLSVLSGISAPAMAKNILDKLTVAEGFNVTLFADDVENAREIAVSDKGIVYAGSMKAGN
VYALIDRNQDGVADEKILVASGLKLPSGVVIKDGDLYVSEVERIIRFKDIDNNLNSPKFEVVFDGFPSETHHGWKVLGVS
PTGELIIPVGVPCNVCAENERYGRIFSLNLETKKLTTIAQGVRNSVGFDFQPGTQTLWFSDNGRDMMGDDIPPCEINKVS
YLGEHFGFPYVHAGTILDPEFGQGKDPAKYTAPALSLGAHVAPLGIHFYLGKQFPSDYQQQLFVAEHGSWNRTKKAGYKV
AVATIEQGKVVKYTPFLTGFMQDEQTFGRPVAFAELADGSLLVSDDYAGAIYRVTYPQTK

Specific function: Unknown

COG id: COG2133

COG function: function code G; Glucose/sorbosone dehydrogenases

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.liquefaciens L-sorbosone dehydrogenase [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011042
- InterPro:   IPR012938
- InterPro:   IPR011041 [H]

Pfam domain/function: PF07995 GSDH [H]

EC number: NA

Molecular weight: Translated: 41399; Mature: 41399

Theoretical pI: Translated: 5.88; Mature: 5.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHKKRAALLTTASFKAVSLLSLSVLSGISAPAMAKNILDKLTVAEGFNVTLFADDVENA
CCCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
REIAVSDKGIVYAGSMKAGNVYALIDRNQDGVADEKILVASGLKLPSGVVIKDGDLYVSE
CEEEECCCCEEEECCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEECCCEEHHH
VERIIRFKDIDNNLNSPKFEVVFDGFPSETHHGWKVLGVSPTGELIIPVGVPCNVCAENE
HHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCEEEEECCCCCEECCCC
RYGRIFSLNLETKKLTTIAQGVRNSVGFDFQPGTQTLWFSDNGRDMMGDDIPPCEINKVS
CCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHH
YLGEHFGFPYVHAGTILDPEFGQGKDPAKYTAPALSLGAHVAPLGIHFYLGKQFPSDYQQ
HHHHHCCCCEEEECEEECCCCCCCCCCCHHCCCHHHHCCEEEEEEEEEEECCCCCCCHHH
QLFVAEHGSWNRTKKAGYKVAVATIEQGKVVKYTPFLTGFMQDEQTFGRPVAFAELADGS
EEEEEECCCCCCCHHCCEEEEEEEECCCCEEEECHHHHHHHCCHHHCCCCEEEEEECCCE
LLVSDDYAGAIYRVTYPQTK
EEEECCCCCEEEEEECCCCC
>Mature Secondary Structure
MDHKKRAALLTTASFKAVSLLSLSVLSGISAPAMAKNILDKLTVAEGFNVTLFADDVENA
CCCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
REIAVSDKGIVYAGSMKAGNVYALIDRNQDGVADEKILVASGLKLPSGVVIKDGDLYVSE
CEEEECCCCEEEECCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCEEEECCCEEHHH
VERIIRFKDIDNNLNSPKFEVVFDGFPSETHHGWKVLGVSPTGELIIPVGVPCNVCAENE
HHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCEEEEECCCCCEECCCC
RYGRIFSLNLETKKLTTIAQGVRNSVGFDFQPGTQTLWFSDNGRDMMGDDIPPCEINKVS
CCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHH
YLGEHFGFPYVHAGTILDPEFGQGKDPAKYTAPALSLGAHVAPLGIHFYLGKQFPSDYQQ
HHHHHCCCCEEEECEEECCCCCCCCCCCHHCCCHHHHCCEEEEEEEEEEECCCCCCCHHH
QLFVAEHGSWNRTKKAGYKVAVATIEQGKVVKYTPFLTGFMQDEQTFGRPVAFAELADGS
EEEEEECCCCCCCHHCCEEEEEEEECCCCEEEECHHHHHHHCCHHHCCCCEEEEEECCCE
LLVSDDYAGAIYRVTYPQTK
EEEECCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]