Click here to switch to the map view.

The map label for this gene is motY [H]

Identifier: 117920980

GI number: 117920980

Start: 3036008

End: 3036880

Strand: Reverse

Name: motY [H]

Synonym: Shewana3_2539

Alternate gene names: 117920980

Gene position: 3036880-3036008 (Counterclockwise)

Preceding gene: 117920982

Following gene: 117920978

Centisome position: 61.08

GC content: 49.14

Gene sequence:

>873_bases
ATGTGGCGAAAACTGATATTAGTATCAATTTTATGCGTTCCAGCAACTGCAATGGCAGAGTTGCGCCACTATGTGGCCTC
TTTGGGCGAATCCCAATGGCGAGTCAGTCAAAACAGCCCCATCGTATGCCGTCTTGAGCATGATATTCCATCTTACGGTA
AGGCGATTTTCACCAGCGAAGCGGGTAAACAGTTAAACCTTAACTTTACCTTGGACATGTGGGTGAAACCGGACCAAGTC
ACACAGGCGACCTTGATGAGTCGCGCCCCCCAGTGGCGTCCTGGCGTAGTATCGAAAGAAATCACTTCACTACGTTACCA
AAAGTATTTTAATGGTGAAGTACCAAAGCGTGCCGCTTGGTCGATGTTGAGCGAACTGAGCCGTGGCATGGAGCCGACGT
TTTATTATGCCGATTGGTATAACGAATCGAATAAAATTGCGGTAGGGCTGTCGGCGGCGAACTTTGGCCGTAAATATGCT
GAGTTTAAGTCGTGCCTATCACACTTATTGCCATACAGTTTCGAGGATATCGCCTTTACCGTACTGAATTACGAAGAAGG
CGGCACCGATTTAACCCGTTTCTCACAGCAGCAGCTTTCCCGCATTCAGGAATACTTGTCCTACGATCCGGATGTGGAAC
TGGTGTTAGTCGATGCCTATACCGACAGTTACGGTGGCCGCTCCGTTAACCAAAAAGTATCGGATAAGCGCGCAGAATCG
GTAAAAGATTTCTTTGTCGCCAGCGGTATTCCTCAGGATAGGATTGTCACTGTTGGCCATGGTGAGCGCCGTCATGTGGC
ATCGAATGATGATATTGAGGAGCGAGCACTCAACCGCCGCGTCGTTATCCGGATCAGTAAGCCGCTGATGTGA

Upstream 100 bases:

>100_bases
GTACTAGGATGTGTCATGTTTGATTGGTGGTTTTATGAGCTAAAGGAACTAAATAGTTTGCCGATAAAACTTCGTAACCG
AATAAACACGAGTAAGGGCT

Downstream 100 bases:

>100_bases
TATTTGGCTCTAAGTTCTAGTTTCGTTCAGTTTAAATGCACTTCATATAAACCAACAATGCCAAGCCTTCTGACTTGGCG
TTATTGGTTTCTTTCTTCTC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: Polar flagellum motor protein [H]

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MWRKLILVSILCVPATAMAELRHYVASLGESQWRVSQNSPIVCRLEHDIPSYGKAIFTSEAGKQLNLNFTLDMWVKPDQV
TQATLMSRAPQWRPGVVSKEITSLRYQKYFNGEVPKRAAWSMLSELSRGMEPTFYYADWYNESNKIAVGLSAANFGRKYA
EFKSCLSHLLPYSFEDIAFTVLNYEEGGTDLTRFSQQQLSRIQEYLSYDPDVELVLVDAYTDSYGGRSVNQKVSDKRAES
VKDFFVASGIPQDRIVTVGHGERRHVASNDDIEERALNRRVVIRISKPLM

Sequences:

>Translated_290_residues
MWRKLILVSILCVPATAMAELRHYVASLGESQWRVSQNSPIVCRLEHDIPSYGKAIFTSEAGKQLNLNFTLDMWVKPDQV
TQATLMSRAPQWRPGVVSKEITSLRYQKYFNGEVPKRAAWSMLSELSRGMEPTFYYADWYNESNKIAVGLSAANFGRKYA
EFKSCLSHLLPYSFEDIAFTVLNYEEGGTDLTRFSQQQLSRIQEYLSYDPDVELVLVDAYTDSYGGRSVNQKVSDKRAES
VKDFFVASGIPQDRIVTVGHGERRHVASNDDIEERALNRRVVIRISKPLM
>Mature_290_residues
MWRKLILVSILCVPATAMAELRHYVASLGESQWRVSQNSPIVCRLEHDIPSYGKAIFTSEAGKQLNLNFTLDMWVKPDQV
TQATLMSRAPQWRPGVVSKEITSLRYQKYFNGEVPKRAAWSMLSELSRGMEPTFYYADWYNESNKIAVGLSAANFGRKYA
EFKSCLSHLLPYSFEDIAFTVLNYEEGGTDLTRFSQQQLSRIQEYLSYDPDVELVLVDAYTDSYGGRSVNQKVSDKRAES
VKDFFVASGIPQDRIVTVGHGERRHVASNDDIEERALNRRVVIRISKPLM

Specific function: Plays the role of a stator in the sodium flagellar motor, stabilizing the force-generating unit through direct interaction with the cell wall. Involved in adherence and invasion of fish cell line [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 33085; Mature: 33085

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRKLILVSILCVPATAMAELRHYVASLGESQWRVSQNSPIVCRLEHDIPSYGKAIFTSE
CCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCEEEECC
AGKQLNLNFTLDMWVKPDQVTQATLMSRAPQWRPGVVSKEITSLRYQKYFNGEVPKRAAW
CCCEEEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
SMLSELSRGMEPTFYYADWYNESNKIAVGLSAANFGRKYAEFKSCLSHLLPYSFEDIAFT
HHHHHHHCCCCCEEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
VLNYEEGGTDLTRFSQQQLSRIQEYLSYDPDVELVLVDAYTDSYGGRSVNQKVSDKRAES
EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHH
VKDFFVASGIPQDRIVTVGHGERRHVASNDDIEERALNRRVVIRISKPLM
HHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCEEEEEECCCCC
>Mature Secondary Structure
MWRKLILVSILCVPATAMAELRHYVASLGESQWRVSQNSPIVCRLEHDIPSYGKAIFTSE
CCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEECCCCCEEEEECCCCCCCCCEEEECC
AGKQLNLNFTLDMWVKPDQVTQATLMSRAPQWRPGVVSKEITSLRYQKYFNGEVPKRAAW
CCCEEEEEEEEEEEECCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
SMLSELSRGMEPTFYYADWYNESNKIAVGLSAANFGRKYAEFKSCLSHLLPYSFEDIAFT
HHHHHHHCCCCCEEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
VLNYEEGGTDLTRFSQQQLSRIQEYLSYDPDVELVLVDAYTDSYGGRSVNQKVSDKRAES
EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHH
VKDFFVASGIPQDRIVTVGHGERRHVASNDDIEERALNRRVVIRISKPLM
HHHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA