Click here to switch to the map view.

The map label for this gene is 117920939

Identifier: 117920939

GI number: 117920939

Start: 2986731

End: 2987603

Strand: Reverse

Name: 117920939

Synonym: Shewana3_2496

Alternate gene names: NA

Gene position: 2987603-2986731 (Counterclockwise)

Preceding gene: 117920940

Following gene: 117920938

Centisome position: 60.09

GC content: 46.16

Gene sequence:

>873_bases
ATGAAAAAAGCTGTGTTGTTAGTGGTGTTGCTATTTGGCTTAACGGCCTGCTCGACCAAATTTAGTTATCATTTTCTCGA
CTGGGCCATAGGTTGGGAGTTGGATGACTATGTCAGCCTTGATAAAAACCAACAGAAGGTCGTCGATGGGCTTATCGACA
AGTTTGTGCTTTGGCACCAATCCGAAGAACTCGGCCATTATGTGGCGCAGCTAACCGAAGTTGAGCAGCAGATCCAAACC
AATACCTTAACTCCCGCATTGTGGGCCGAGCATGTCACGCTCGCCAAACGGCATTGGTTTCGGTTATTTGAGTTTGCACT
GCCGGAAATGTTGCCGATTATCTCATCGTTAACCGATGAACAGGTGAAGCAAATTCTTACCCAGTCGCGAAAAGACGAGC
AGGAATTGATTAAGGAGTTTGCCGGTAAAACCCCCGAGCAGTTACAGCAGGAGGCCGATGAAAATCTTATCGAGCAATTT
GATGACTGGCTGGGTAGCGTAACGGATGAGCAAAAAACGCTTATTCATCAATATAATCAACAGCGACTGTCGACCTTAGA
TATGTGGCTCGATTACCGCCACGAATGGTTACGTCAATTTGAAGTAGCCCTTGGACAGCGCAGCGATATTCCGTTGCTGA
CCGAGCGATTGACCCTGCTGATGACGCGCCCTGATGAGCTTAAGTCGGAAAAATATCGCACCATTTTAAGGCAAAATACC
GAAGCATTCGGCGGCTTGTTACTCACGATCAATGCCAGTCTGTCGGCGAAGCAGTCCAAGCATTTTTATAAAAAGCTGAA
CAAACTTATTCAAGATCTTCGTGAATTAAATCAAGAGGGGATCGAAAAAGTGGCAGAAGCCACGAAAGATTAA

Upstream 100 bases:

>100_bases
TCTCACTGCCTCTGTTTGGTTATGGTTGTTGTGTTAAAAAAATAAACTTTCTATTAACCTCAGTGTCATAGGATGACCAA
GGCTGAACGGATGCAAATTG

Downstream 100 bases:

>100_bases
TCCTTAAGCCAAGGTCTATTGGGCAACTCCATCTAATTCTGAGATTGCCCATGTCCCTTGTTAACCTTTATCAAAAATTC
CTCAATGCGAGCCGTTATGG

Product: hypothetical protein

Products: NA

Alternate protein names: DNA Polymerase III Alpha Subunit; Rare Lipoprotein A

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MKKAVLLVVLLFGLTACSTKFSYHFLDWAIGWELDDYVSLDKNQQKVVDGLIDKFVLWHQSEELGHYVAQLTEVEQQIQT
NTLTPALWAEHVTLAKRHWFRLFEFALPEMLPIISSLTDEQVKQILTQSRKDEQELIKEFAGKTPEQLQQEADENLIEQF
DDWLGSVTDEQKTLIHQYNQQRLSTLDMWLDYRHEWLRQFEVALGQRSDIPLLTERLTLLMTRPDELKSEKYRTILRQNT
EAFGGLLLTINASLSAKQSKHFYKKLNKLIQDLRELNQEGIEKVAEATKD

Sequences:

>Translated_290_residues
MKKAVLLVVLLFGLTACSTKFSYHFLDWAIGWELDDYVSLDKNQQKVVDGLIDKFVLWHQSEELGHYVAQLTEVEQQIQT
NTLTPALWAEHVTLAKRHWFRLFEFALPEMLPIISSLTDEQVKQILTQSRKDEQELIKEFAGKTPEQLQQEADENLIEQF
DDWLGSVTDEQKTLIHQYNQQRLSTLDMWLDYRHEWLRQFEVALGQRSDIPLLTERLTLLMTRPDELKSEKYRTILRQNT
EAFGGLLLTINASLSAKQSKHFYKKLNKLIQDLRELNQEGIEKVAEATKD
>Mature_290_residues
MKKAVLLVVLLFGLTACSTKFSYHFLDWAIGWELDDYVSLDKNQQKVVDGLIDKFVLWHQSEELGHYVAQLTEVEQQIQT
NTLTPALWAEHVTLAKRHWFRLFEFALPEMLPIISSLTDEQVKQILTQSRKDEQELIKEFAGKTPEQLQQEADENLIEQF
DDWLGSVTDEQKTLIHQYNQQRLSTLDMWLDYRHEWLRQFEVALGQRSDIPLLTERLTLLMTRPDELKSEKYRTILRQNT
EAFGGLLLTINASLSAKQSKHFYKKLNKLIQDLRELNQEGIEKVAEATKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33977; Mature: 33977

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAVLLVVLLFGLTACSTKFSYHFLDWAIGWELDDYVSLDKNQQKVVDGLIDKFVLWHQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHCC
SEELGHYVAQLTEVEQQIQTNTLTPALWAEHVTLAKRHWFRLFEFALPEMLPIISSLTDE
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
QVKQILTQSRKDEQELIKEFAGKTPEQLQQEADENLIEQFDDWLGSVTDEQKTLIHQYNQ
HHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QRLSTLDMWLDYRHEWLRQFEVALGQRSDIPLLTERLTLLMTRPDELKSEKYRTILRQNT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCH
EAFGGLLLTINASLSAKQSKHFYKKLNKLIQDLRELNQEGIEKVAEATKD
HHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKAVLLVVLLFGLTACSTKFSYHFLDWAIGWELDDYVSLDKNQQKVVDGLIDKFVLWHQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHCC
SEELGHYVAQLTEVEQQIQTNTLTPALWAEHVTLAKRHWFRLFEFALPEMLPIISSLTDE
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
QVKQILTQSRKDEQELIKEFAGKTPEQLQQEADENLIEQFDDWLGSVTDEQKTLIHQYNQ
HHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QRLSTLDMWLDYRHEWLRQFEVALGQRSDIPLLTERLTLLMTRPDELKSEKYRTILRQNT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCH
EAFGGLLLTINASLSAKQSKHFYKKLNKLIQDLRELNQEGIEKVAEATKD
HHHCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA