Click here to switch to the map view.

The map label for this gene is bioC [C]

Identifier: 117920906

GI number: 117920906

Start: 2952172

End: 2952786

Strand: Reverse

Name: bioC [C]

Synonym: Shewana3_2463

Alternate gene names: 117920906

Gene position: 2952786-2952172 (Counterclockwise)

Preceding gene: 117920912

Following gene: 117920905

Centisome position: 59.39

GC content: 48.94

Gene sequence:

>615_bases
ATGAAGTTAAATCCATTCGAGAAAAAGTTAGTCCAGCATCCGCTACGTTTTTGGTTGCAAAACCATATTGAAGCGCCATT
ACTGACTTCTATGATGCCCAAACCCCTTCCTTATATACGTCACGCACTCGAAATTGGTTGTGGTTTTGGTAACGGAATTC
AGTTGATCCGCGACCATTTTGGGGCCGAGCAAGTCACGGCTGTCGATCTTGACCCTGAGATGGTCGCACCCGCTAAAGCG
CGCTGGCATGATTCACCCAATGGGTTAAGCCAATTGGCATTCAGTGTTGCCGATGCTACTGCGTTGCCTTTTGCAAATGC
CCAGTTTGATGTGGTGTTCAATTTTGCCGTGTTTCACCATATTCCCGATTGGCAAGCGGCGGTTGCCGAGGTGGCAAGGG
TGCTAAAACCCAACGGCTACTTTGTGGTAGAGGATTTATACCGCGCTGCTATTTGCAATCCCTTGAGTCGACGGTTGTTC
GAGCATCCACAACAGAATCGATTTAACCATCAAGAATGGTTAGCAGGGCTGCGCCAAGGGGGATTTGAGATCCGCTGCGA
GAGGAATCTTCTCAATCTTTCGGGCATGGTGCTAGCCCAAAAACGCATGGGATAA

Upstream 100 bases:

>100_bases
TCATAGTGGCCTCAAGTGAACTTATGTCTATATCATTACGTACCATATACAGAATTTGATCAGTGTACCAAGCAATAACC
GATTCATTTAAGGGGATGAG

Downstream 100 bases:

>100_bases
AGGGGGGAATTGCGACGATAGATGCGCGACAGCTGTAAGCGGATCACGTATTTATCGGGACGCCTGCCGAACGATAAAGG
ATTGCCGAGTGATTGTAATT

Product: type 11 methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MKLNPFEKKLVQHPLRFWLQNHIEAPLLTSMMPKPLPYIRHALEIGCGFGNGIQLIRDHFGAEQVTAVDLDPEMVAPAKA
RWHDSPNGLSQLAFSVADATALPFANAQFDVVFNFAVFHHIPDWQAAVAEVARVLKPNGYFVVEDLYRAAICNPLSRRLF
EHPQQNRFNHQEWLAGLRQGGFEIRCERNLLNLSGMVLAQKRMG

Sequences:

>Translated_204_residues
MKLNPFEKKLVQHPLRFWLQNHIEAPLLTSMMPKPLPYIRHALEIGCGFGNGIQLIRDHFGAEQVTAVDLDPEMVAPAKA
RWHDSPNGLSQLAFSVADATALPFANAQFDVVFNFAVFHHIPDWQAAVAEVARVLKPNGYFVVEDLYRAAICNPLSRRLF
EHPQQNRFNHQEWLAGLRQGGFEIRCERNLLNLSGMVLAQKRMG
>Mature_204_residues
MKLNPFEKKLVQHPLRFWLQNHIEAPLLTSMMPKPLPYIRHALEIGCGFGNGIQLIRDHFGAEQVTAVDLDPEMVAPAKA
RWHDSPNGLSQLAFSVADATALPFANAQFDVVFNFAVFHHIPDWQAAVAEVARVLKPNGYFVVEDLYRAAICNPLSRRLF
EHPQQNRFNHQEWLAGLRQGGFEIRCERNLLNLSGMVLAQKRMG

Specific function: Catalyzes the methylation of the lipid moiety of the intermediate compounds phthiotriol and glycosylated phenolphthiotriol dimycoserosates to form phthiocerol dimycocerosates (DIM A) and glycosylated phenolphthiocerol dimycocerosates (PGL) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17561380, Length=101, Percent_Identity=33.6633663366337, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: NA

Molecular weight: Translated: 23149; Mature: 23149

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNPFEKKLVQHPLRFWLQNHIEAPLLTSMMPKPLPYIRHALEIGCGFGNGIQLIRDHF
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHC
GAEQVTAVDLDPEMVAPAKARWHDSPNGLSQLAFSVADATALPFANAQFDVVFNFAVFHH
CCCCEEEECCCCHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
IPDWQAAVAEVARVLKPNGYFVVEDLYRAAICNPLSRRLFEHPQQNRFNHQEWLAGLRQG
CCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHCC
GFEIRCERNLLNLSGMVLAQKRMG
CEEEEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLNPFEKKLVQHPLRFWLQNHIEAPLLTSMMPKPLPYIRHALEIGCGFGNGIQLIRDHF
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHC
GAEQVTAVDLDPEMVAPAKARWHDSPNGLSQLAFSVADATALPFANAQFDVVFNFAVFHH
CCCCEEEECCCCHHHCCCHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
IPDWQAAVAEVARVLKPNGYFVVEDLYRAAICNPLSRRLFEHPQQNRFNHQEWLAGLRQG
CCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHCC
GFEIRCERNLLNLSGMVLAQKRMG
CEEEEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA