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The map label for this gene is yedQ [H]

Identifier: 117920874

GI number: 117920874

Start: 2914549

End: 2915538

Strand: Direct

Name: yedQ [H]

Synonym: Shewana3_2431

Alternate gene names: 117920874

Gene position: 2914549-2915538 (Clockwise)

Preceding gene: 117920873

Following gene: 117920876

Centisome position: 58.62

GC content: 47.27

Gene sequence:

>990_bases
ATGTTGTTAGTACTCCCTTTAATTGCACGGCTGCGAACCATGACAAAAATTGCCCCACAACACGCCGAAACGGGTTCCGA
TACCAACCATAGTCAAGCCATTGATACTATTTTAAATAGTCTCGATGCGCTGGTTTATGTCTCTGATTTAGATACCTATG
ATTTACTCTATCTCAATGACTACGGTGTATCGGTTTGGGGTGAGGCAAAAGGTAAAAAGTGCTATCAAGTGCTGCAATCG
GCACAACACTCGCCTTGTCAATTTTGTACTAACCCTAAACTATTGGATGAAAAGGGAAATCCTGCTGGCGTTCATGTGTG
GGAGTTTCAAAACACCCAAAATGGCCGTTGGTACCAATGTCGCGATCAAGCCATTCATTGGACCGATGGCCGATTAGTTA
GAATCGAAATCGCCACCGATATCACCGAACGCAAACAAATGGAGCAAGCGCTGATAGAGGCAAAATCCACGGCCGAGCGC
CTTGCCGACACTGACGAACTGACCCAACTCTATAATCGCCGGGCTTTTTTCAATCTCGGTCGCCAAATTGCGCAACAAAC
AGCACAACCACTGGCCTTTATCATGTTCGATATTGATCACTTTAAGCGGATTAACGACCGCTGGGGCCATGCGATGGGTG
ATGCGGCGCTTATCCATATCGCAAGATTGACGCAAACCAAACTGAGAACAAATGATATTCTTGCTCGTTTAGGCGGCGAA
GAGTTTGGGCTGATTTTACCCAACACTCACCATGAGCAAGCATGGCAAGTGGCGGAGTCAATTCGACACGGGTTTGATAC
GCAGCCACTACAGCTTAACGGCCACAGCATCCACTGCACAGCAAGCTTTGGCATATCATCCTTGGTCTTGCCTCAAATCA
ATCATCCCGATGAGGCACAAACCCTCTTGGAAACCCTATTCAATAATGCCGATCAGGCCATGATGCAAGCCAAGCGAGCA
GGTAGAAATCAAGTCTGTGATGCGGTCTAA

Upstream 100 bases:

>100_bases
CCTAGTAATAGAAATCTAGCCATTTTAGAACAACATAATTAATTGAATATCGGACAGATTTATATTTATAGGTTATATTA
GCATCTATAAATAGTACCCC

Downstream 100 bases:

>100_bases
CAATACAAATAAAGTTAGTCCATTTATGATTGGTGTAAGACTTGTGATGAGATAGCAACAATGCCAATCCGAACTGACTG
TATAACTCTTCGTGCAGCTA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MLLVLPLIARLRTMTKIAPQHAETGSDTNHSQAIDTILNSLDALVYVSDLDTYDLLYLNDYGVSVWGEAKGKKCYQVLQS
AQHSPCQFCTNPKLLDEKGNPAGVHVWEFQNTQNGRWYQCRDQAIHWTDGRLVRIEIATDITERKQMEQALIEAKSTAER
LADTDELTQLYNRRAFFNLGRQIAQQTAQPLAFIMFDIDHFKRINDRWGHAMGDAALIHIARLTQTKLRTNDILARLGGE
EFGLILPNTHHEQAWQVAESIRHGFDTQPLQLNGHSIHCTASFGISSLVLPQINHPDEAQTLLETLFNNADQAMMQAKRA
GRNQVCDAV

Sequences:

>Translated_329_residues
MLLVLPLIARLRTMTKIAPQHAETGSDTNHSQAIDTILNSLDALVYVSDLDTYDLLYLNDYGVSVWGEAKGKKCYQVLQS
AQHSPCQFCTNPKLLDEKGNPAGVHVWEFQNTQNGRWYQCRDQAIHWTDGRLVRIEIATDITERKQMEQALIEAKSTAER
LADTDELTQLYNRRAFFNLGRQIAQQTAQPLAFIMFDIDHFKRINDRWGHAMGDAALIHIARLTQTKLRTNDILARLGGE
EFGLILPNTHHEQAWQVAESIRHGFDTQPLQLNGHSIHCTASFGISSLVLPQINHPDEAQTLLETLFNNADQAMMQAKRA
GRNQVCDAV
>Mature_329_residues
MLLVLPLIARLRTMTKIAPQHAETGSDTNHSQAIDTILNSLDALVYVSDLDTYDLLYLNDYGVSVWGEAKGKKCYQVLQS
AQHSPCQFCTNPKLLDEKGNPAGVHVWEFQNTQNGRWYQCRDQAIHWTDGRLVRIEIATDITERKQMEQALIEAKSTAER
LADTDELTQLYNRRAFFNLGRQIAQQTAQPLAFIMFDIDHFKRINDRWGHAMGDAALIHIARLTQTKLRTNDILARLGGE
EFGLILPNTHHEQAWQVAESIRHGFDTQPLQLNGHSIHCTASFGISSLVLPQINHPDEAQTLLETLFNNADQAMMQAKRA
GRNQVCDAV

Specific function: Involves in the regulation of cellulose production [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=41.2121212121212, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1787262, Length=215, Percent_Identity=32.5581395348837, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI87081881, Length=195, Percent_Identity=34.3589743589744, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=32.9411764705882, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1786584, Length=182, Percent_Identity=32.967032967033, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1788085, Length=204, Percent_Identity=29.4117647058824, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=35.7575757575758, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788381, Length=194, Percent_Identity=34.020618556701, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787541, Length=259, Percent_Identity=26.2548262548263, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=29.2682926829268, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081977, Length=216, Percent_Identity=29.6296296296296, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081974, Length=101, Percent_Identity=36.6336633663366, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=34.9397590361446, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 37198; Mature: 37198

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLVLPLIARLRTMTKIAPQHAETGSDTNHSQAIDTILNSLDALVYVSDLDTYDLLYLND
CEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCEEEEEEEC
YGVSVWGEAKGKKCYQVLQSAQHSPCQFCTNPKLLDEKGNPAGVHVWEFQNTQNGRWYQC
CCEEEECCCCCHHHHHHHHHCCCCCHHHCCCCCEECCCCCCCCEEEEEECCCCCCCEEEE
RDQAIHWTDGRLVRIEIATDITERKQMEQALIEAKSTAERLADTDELTQLYNRRAFFNLG
CCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RQIAQQTAQPLAFIMFDIDHFKRINDRWGHAMGDAALIHIARLTQTKLRTNDILARLGGE
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
EFGLILPNTHHEQAWQVAESIRHGFDTQPLQLNGHSIHCTASFGISSLVLPQINHPDEAQ
CCEEECCCCCHHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCHHEECCCCCCCHHHH
TLLETLFNNADQAMMQAKRAGRNQVCDAV
HHHHHHHCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLLVLPLIARLRTMTKIAPQHAETGSDTNHSQAIDTILNSLDALVYVSDLDTYDLLYLND
CEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCEEEEEEEC
YGVSVWGEAKGKKCYQVLQSAQHSPCQFCTNPKLLDEKGNPAGVHVWEFQNTQNGRWYQC
CCEEEECCCCCHHHHHHHHHCCCCCHHHCCCCCEECCCCCCCCEEEEEECCCCCCCEEEE
RDQAIHWTDGRLVRIEIATDITERKQMEQALIEAKSTAERLADTDELTQLYNRRAFFNLG
CCCEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
RQIAQQTAQPLAFIMFDIDHFKRINDRWGHAMGDAALIHIARLTQTKLRTNDILARLGGE
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
EFGLILPNTHHEQAWQVAESIRHGFDTQPLQLNGHSIHCTASFGISSLVLPQINHPDEAQ
CCEEECCCCCHHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCHHEECCCCCCCHHHH
TLLETLFNNADQAMMQAKRAGRNQVCDAV
HHHHHHHCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA