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The map label for this gene is intR [H]

Identifier: 117920799

GI number: 117920799

Start: 2835885

End: 2837063

Strand: Reverse

Name: intR [H]

Synonym: Shewana3_2356

Alternate gene names: 117920799

Gene position: 2837063-2835885 (Counterclockwise)

Preceding gene: 117920800

Following gene: 117920798

Centisome position: 57.06

GC content: 45.29

Gene sequence:

>1179_bases
ATGGGAACTGTAAATAGCCGAGATGGCAAACTTTATCTGGATTTTCGCTATAAGGGTGTACGTTGCCGAGAGCAGACCAG
TCTTGCCGATACTCCGGCGAATCGACAAAAATTAAATAAACTGTTGTTAATGCTGGAACAGCAAATGAAAGCTGGTTCAT
TTGATTATCGGCATCATTTTCCTAATAGCCCTAAAGTCGAACATTTCGCTCAGTTAGCTAAACTCAGTCAATTCCATGTT
ACTGGTGGGCGCATATTGTTTAGTGTCTTTGCTAATCTTTGGCTGGACGAGAAGCGGGTAGAATGGCGCGCGAGTCAAAT
TGAGACGGTAGAGGGGATCTTAAGGTGTCACCTCATACCCGCGATGGGGACTAAGATGATAGCCACTATCTGTAAGCAGG
ATATTCTGGGTTTGCGTCTAAGTCTTTGTGAGGTCGATGCACTCACAAATCGTTCGCTGTCAGCTTCAAGAATCAATCAC
ATTATGACTTATTTACGATTAATCCTAAATGAGGCTGCTGAGCGCTTTGGTTTTCAGACTCCTTGGCGAAATATCAAAGC
GTTACCTATGCCGCGAACGGATATTCAACCATTTTCGTTGGTAGAGGTATATCGGATTATCGAGAGTGTAAGGGATGATT
TTCGCCCTTACTACACCGTTCGATTTTTTACAGGTATGCGCACAGGGGAAATCGATGGTCTGACGTGGGAAAATATTGAT
TTTGCAAACAGATTGATCCACATCCGCCAGTCATTAGTTCGTGGCAGCCTTGGCCTAACTAAAACGTCAAGTTCAGACCG
TGCGATTGCAATGAATCAGCCGGTATATGAAGCACTTCAGGCCCAAAGTAAGCTAACCAAAATTCGGAGCAAATTCGTTT
TTTGTAACCGCCGTGGAGACGCACTGAGCCATCAGAATGTGACCAAACGTGTTTGGTATCCACTGCTGGAAAGCCTGGCA
CTCGAAAAGCGAAATCCTTACCAGACCAGACATACTGCAGCAACCCTGTGGCTTGCCGCTGGAGAGAGCCCAGAATGGAT
TGCTCGGCAGTTAGGACATGCCAATACGGGGATGTTATTTAGAGTGTATTCTCGCTATGTACCTAATTTATTAGGGCAAG
ATGGCGCAGCGTTTGAACGGTTGATTGGTAATGGTCCAAAAGGGGAGTCGTCAAAATGA

Upstream 100 bases:

>100_bases
CGGGCGGAAAATTCTCTATATATGGGAACGAGTTGAGGAGTCTATGTTGCTTGGAGCCTCCGCCCACGATCTGATAAATC
AGCTGAACTAGGGGGTTGCC

Downstream 100 bases:

>100_bases
ATATTAAATCCCGAACAAATAATGCTGATGACTTGGCCTGGGTACATCTGATTGAGCGGAGAAAACAGGTAGAGTTGTGG
CAATTTAGCTGCTTAAGACA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MGTVNSRDGKLYLDFRYKGVRCREQTSLADTPANRQKLNKLLLMLEQQMKAGSFDYRHHFPNSPKVEHFAQLAKLSQFHV
TGGRILFSVFANLWLDEKRVEWRASQIETVEGILRCHLIPAMGTKMIATICKQDILGLRLSLCEVDALTNRSLSASRINH
IMTYLRLILNEAAERFGFQTPWRNIKALPMPRTDIQPFSLVEVYRIIESVRDDFRPYYTVRFFTGMRTGEIDGLTWENID
FANRLIHIRQSLVRGSLGLTKTSSSDRAIAMNQPVYEALQAQSKLTKIRSKFVFCNRRGDALSHQNVTKRVWYPLLESLA
LEKRNPYQTRHTAATLWLAAGESPEWIARQLGHANTGMLFRVYSRYVPNLLGQDGAAFERLIGNGPKGESSK

Sequences:

>Translated_392_residues
MGTVNSRDGKLYLDFRYKGVRCREQTSLADTPANRQKLNKLLLMLEQQMKAGSFDYRHHFPNSPKVEHFAQLAKLSQFHV
TGGRILFSVFANLWLDEKRVEWRASQIETVEGILRCHLIPAMGTKMIATICKQDILGLRLSLCEVDALTNRSLSASRINH
IMTYLRLILNEAAERFGFQTPWRNIKALPMPRTDIQPFSLVEVYRIIESVRDDFRPYYTVRFFTGMRTGEIDGLTWENID
FANRLIHIRQSLVRGSLGLTKTSSSDRAIAMNQPVYEALQAQSKLTKIRSKFVFCNRRGDALSHQNVTKRVWYPLLESLA
LEKRNPYQTRHTAATLWLAAGESPEWIARQLGHANTGMLFRVYSRYVPNLLGQDGAAFERLIGNGPKGESSK
>Mature_391_residues
GTVNSRDGKLYLDFRYKGVRCREQTSLADTPANRQKLNKLLLMLEQQMKAGSFDYRHHFPNSPKVEHFAQLAKLSQFHVT
GGRILFSVFANLWLDEKRVEWRASQIETVEGILRCHLIPAMGTKMIATICKQDILGLRLSLCEVDALTNRSLSASRINHI
MTYLRLILNEAAERFGFQTPWRNIKALPMPRTDIQPFSLVEVYRIIESVRDDFRPYYTVRFFTGMRTGEIDGLTWENIDF
ANRLIHIRQSLVRGSLGLTKTSSSDRAIAMNQPVYEALQAQSKLTKIRSKFVFCNRRGDALSHQNVTKRVWYPLLESLAL
EKRNPYQTRHTAATLWLAAGESPEWIARQLGHANTGMLFRVYSRYVPNLLGQDGAAFERLIGNGPKGESSK

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=392, Percent_Identity=25.765306122449, Blast_Score=124, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44926; Mature: 44795

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTVNSRDGKLYLDFRYKGVRCREQTSLADTPANRQKLNKLLLMLEQQMKAGSFDYRHHF
CCCCCCCCCEEEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCC
PNSPKVEHFAQLAKLSQFHVTGGRILFSVFANLWLDEKRVEWRASQIETVEGILRCHLIP
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AMGTKMIATICKQDILGLRLSLCEVDALTNRSLSASRINHIMTYLRLILNEAAERFGFQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PWRNIKALPMPRTDIQPFSLVEVYRIIESVRDDFRPYYTVRFFTGMRTGEIDGLTWENID
CCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHH
FANRLIHIRQSLVRGSLGLTKTSSSDRAIAMNQPVYEALQAQSKLTKIRSKFVFCNRRGD
HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHEEECCCCC
ALSHQNVTKRVWYPLLESLALEKRNPYQTRHTAATLWLAAGESPEWIARQLGHANTGMLF
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEEEECCCCHHHHHHHHCCCCCHHHH
RVYSRYVPNLLGQDGAAFERLIGNGPKGESSK
HHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GTVNSRDGKLYLDFRYKGVRCREQTSLADTPANRQKLNKLLLMLEQQMKAGSFDYRHHF
CCCCCCCCEEEEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCC
PNSPKVEHFAQLAKLSQFHVTGGRILFSVFANLWLDEKRVEWRASQIETVEGILRCHLIP
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AMGTKMIATICKQDILGLRLSLCEVDALTNRSLSASRINHIMTYLRLILNEAAERFGFQT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PWRNIKALPMPRTDIQPFSLVEVYRIIESVRDDFRPYYTVRFFTGMRTGEIDGLTWENID
CCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHH
FANRLIHIRQSLVRGSLGLTKTSSSDRAIAMNQPVYEALQAQSKLTKIRSKFVFCNRRGD
HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHEEECCCCC
ALSHQNVTKRVWYPLLESLALEKRNPYQTRHTAATLWLAAGESPEWIARQLGHANTGMLF
CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEEEEECCCCHHHHHHHHCCCCCHHHH
RVYSRYVPNLLGQDGAAFERLIGNGPKGESSK
HHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]