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The map label for this gene is bdlA [H]

Identifier: 117920693

GI number: 117920693

Start: 2711588

End: 2712895

Strand: Direct

Name: bdlA [H]

Synonym: Shewana3_2250

Alternate gene names: 117920693

Gene position: 2711588-2712895 (Clockwise)

Preceding gene: 117920692

Following gene: 117920694

Centisome position: 54.53

GC content: 46.33

Gene sequence:

>1308_bases
ATGTTTTGGTGGAAAGTTAAATCAAATAACAGGGATGCGAACAACCATTCATCAGGTTTTACAGCAGCCGAAACGCTTGA
GAATGAACTGGCGGCGATTCGTGCCTACACTGCCTATATTTGTTTCACACCTAAGGGTGAAATCATTGAAGCCAATGATA
TTTTCTTAGATGTAATGGGTTACAGTGCCAATGAAATCCTTGGTAAACACCATAGAATGTTTTGTACGGCACAATACTCG
GGCTCGCAGGAATATCAAAAGTTTTGGCAGGAACTTGCTGCAGGCAATGCGTTTACGGGGACATTCCAACGTTTAAAGAA
AAACCACATCCCAGTTTATGTCGAGGCCAGTTATTTCCCCGTAAAAAACAGTGCGGGTGACGTCGTGAAAATCATCAAAA
TCGCCAATGATGTTACGGCGTCACAACTTAACCTCATTGCTAAAAATGCCATTCTCGATGCCCTCGATCGCTCCCAAGCC
GTTATTGAGTTTTTACCCGATGGCACAGTGATCACCGCGAATCAAAACTTCTTGGATATCATGCATTACCGACTAGATGA
GATCCAAGGTAAACACCATAAGATGTTCTGTGACAAAGAGTTTTACCGTATTAGACCCGACTTTTGGAAACGACTCGCCG
CAGGCGAACACTTCACCGGACGCTTTAAACGCATCGATGCACATAACAATGTGATTTGGCTTGAAGCCACCTACAATCCG
ATCTGGGATGCATCAAATAAGGTGTATAAGATTGTTAAGTTTGCCTCGGATATCTCCCATAGGGTCAATACCGCCCTGCA
AGCGGTGGACATGGCGGCGGCGACGTCAGAGCAAACCTCACAAATCACCACAAATGCAGTGCAAGTGCTGAACGAAGCCG
TCTGTACTTCGCATCAAATTGCCGAACAAGTTAAAAATGCCTCGAATATTGGTGGTGAGCTACTCGTACAATCAAAAAAT
ATCAACGACATAGTGATCACCATCCGTGGCATTGCAGAACAAACCAATTTACTGGCTCTCAATGCGGCGATTGAGGCAGC
AAGAGCGGGCGATCTTGGGCGAGGTTTTGCCGTCGTAGCCGATGAGGTCAGAAAGTTAGCCTCTCGCACCTCCACGGCGA
CCAGCGAAATCGCGAATGTGGTTCAACAAAATACCGACCTAATCAAAAACATCGATCATCAACTGAGCAACATCACCAAT
GTGGCATTGCATGGGGAGGACAGTATCAATCATGTCGCCGCTGGCCTTGCCGATGTCGGCAATGGTGTCAGCCAATTTGT
CGCTATGGTTGAACAGCTGAGGCCCTAA

Upstream 100 bases:

>100_bases
ACATATAGGTTTGATGAACCTGTGGTGTATAAGCAGATAGCAGAGTGCCGTTGTGATGCTTTCTTGTTAATAACCAAATG
ATTAATAAAGGAATGACATT

Downstream 100 bases:

>100_bases
TCAGCGGTAATGAACCTTAGAGTACACTTAATTAACAATAGGTTAGCATCAGTGAATAGCGGTATTCTTTTGCTGTGGAT
GGATAAAACCGTGCGAACTC

Product: methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor

Products: NA

Alternate protein names: Chemotaxis regulator BdlA [H]

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MFWWKVKSNNRDANNHSSGFTAAETLENELAAIRAYTAYICFTPKGEIIEANDIFLDVMGYSANEILGKHHRMFCTAQYS
GSQEYQKFWQELAAGNAFTGTFQRLKKNHIPVYVEASYFPVKNSAGDVVKIIKIANDVTASQLNLIAKNAILDALDRSQA
VIEFLPDGTVITANQNFLDIMHYRLDEIQGKHHKMFCDKEFYRIRPDFWKRLAAGEHFTGRFKRIDAHNNVIWLEATYNP
IWDASNKVYKIVKFASDISHRVNTALQAVDMAAATSEQTSQITTNAVQVLNEAVCTSHQIAEQVKNASNIGGELLVQSKN
INDIVITIRGIAEQTNLLALNAAIEAARAGDLGRGFAVVADEVRKLASRTSTATSEIANVVQQNTDLIKNIDHQLSNITN
VALHGEDSINHVAAGLADVGNGVSQFVAMVEQLRP

Sequences:

>Translated_435_residues
MFWWKVKSNNRDANNHSSGFTAAETLENELAAIRAYTAYICFTPKGEIIEANDIFLDVMGYSANEILGKHHRMFCTAQYS
GSQEYQKFWQELAAGNAFTGTFQRLKKNHIPVYVEASYFPVKNSAGDVVKIIKIANDVTASQLNLIAKNAILDALDRSQA
VIEFLPDGTVITANQNFLDIMHYRLDEIQGKHHKMFCDKEFYRIRPDFWKRLAAGEHFTGRFKRIDAHNNVIWLEATYNP
IWDASNKVYKIVKFASDISHRVNTALQAVDMAAATSEQTSQITTNAVQVLNEAVCTSHQIAEQVKNASNIGGELLVQSKN
INDIVITIRGIAEQTNLLALNAAIEAARAGDLGRGFAVVADEVRKLASRTSTATSEIANVVQQNTDLIKNIDHQLSNITN
VALHGEDSINHVAAGLADVGNGVSQFVAMVEQLRP
>Mature_435_residues
MFWWKVKSNNRDANNHSSGFTAAETLENELAAIRAYTAYICFTPKGEIIEANDIFLDVMGYSANEILGKHHRMFCTAQYS
GSQEYQKFWQELAAGNAFTGTFQRLKKNHIPVYVEASYFPVKNSAGDVVKIIKIANDVTASQLNLIAKNAILDALDRSQA
VIEFLPDGTVITANQNFLDIMHYRLDEIQGKHHKMFCDKEFYRIRPDFWKRLAAGEHFTGRFKRIDAHNNVIWLEATYNP
IWDASNKVYKIVKFASDISHRVNTALQAVDMAAATSEQTSQITTNAVQVLNEAVCTSHQIAEQVKNASNIGGELLVQSKN
INDIVITIRGIAEQTNLLALNAAIEAARAGDLGRGFAVVADEVRKLASRTSTATSEIANVVQQNTDLIKNIDHQLSNITN
VALHGEDSINHVAAGLADVGNGVSQFVAMVEQLRP

Specific function: Essential for biofilm dispersion by sensing environmental cues. May be involved in sensing and transducing signals within cells, resulting in the modulation of c-di-GMP levels, swimming motility and adhesiveness of the bacterial cell surface [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1788194, Length=200, Percent_Identity=35.5, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1788195, Length=223, Percent_Identity=32.2869955156951, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1787690, Length=188, Percent_Identity=35.6382978723404, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI2367378, Length=210, Percent_Identity=31.4285714285714, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1789453, Length=167, Percent_Identity=32.9341317365269, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00015 MCPsignal; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 48214; Mature: 48214

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50112 PAS ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFWWKVKSNNRDANNHSSGFTAAETLENELAAIRAYTAYICFTPKGEIIEANDIFLDVMG
CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHEEEEEEEEECCCCCEEECCCEEEEEEC
YSANEILGKHHRMFCTAQYSGSQEYQKFWQELAAGNAFTGTFQRLKKNHIPVYVEASYFP
CCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEEC
VKNSAGDVVKIIKIANDVTASQLNLIAKNAILDALDRSQAVIEFLPDGTVITANQNFLDI
CCCCCCCCEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHH
MHYRLDEIQGKHHKMFCDKEFYRIRPDFWKRLAAGEHFTGRFKRIDAHNNVIWLEATYNP
HHHHHHHHCCCHHHEECCCHHHHCCHHHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCC
IWDASNKVYKIVKFASDISHRVNTALQAVDMAAATSEQTSQITTNAVQVLNEAVCTSHQI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AEQVKNASNIGGELLVQSKNINDIVITIRGIAEQTNLLALNAAIEAARAGDLGRGFAVVA
HHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEHHHHHHHHCCCCCCCHHHHH
DEVRKLASRTSTATSEIANVVQQNTDLIKNIDHQLSNITNVALHGEDSINHVAAGLADVG
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHC
NGVSQFVAMVEQLRP
CCHHHHHHHHHHHCC
>Mature Secondary Structure
MFWWKVKSNNRDANNHSSGFTAAETLENELAAIRAYTAYICFTPKGEIIEANDIFLDVMG
CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHEEEEEEEEECCCCCEEECCCEEEEEEC
YSANEILGKHHRMFCTAQYSGSQEYQKFWQELAAGNAFTGTFQRLKKNHIPVYVEASYFP
CCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEEC
VKNSAGDVVKIIKIANDVTASQLNLIAKNAILDALDRSQAVIEFLPDGTVITANQNFLDI
CCCCCCCCEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHH
MHYRLDEIQGKHHKMFCDKEFYRIRPDFWKRLAAGEHFTGRFKRIDAHNNVIWLEATYNP
HHHHHHHHCCCHHHEECCCHHHHCCHHHHHHHHCCCCCCCCEEEEECCCCEEEEEECCCC
IWDASNKVYKIVKFASDISHRVNTALQAVDMAAATSEQTSQITTNAVQVLNEAVCTSHQI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
AEQVKNASNIGGELLVQSKNINDIVITIRGIAEQTNLLALNAAIEAARAGDLGRGFAVVA
HHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEHHHHHHHHCCCCCCCHHHHH
DEVRKLASRTSTATSEIANVVQQNTDLIKNIDHQLSNITNVALHGEDSINHVAAGLADVG
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHC
NGVSQFVAMVEQLRP
CCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]