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The map label for this gene is 117920654

Identifier: 117920654

GI number: 117920654

Start: 2656568

End: 2657629

Strand: Reverse

Name: 117920654

Synonym: Shewana3_2211

Alternate gene names: NA

Gene position: 2657629-2656568 (Counterclockwise)

Preceding gene: 117920656

Following gene: 117920653

Centisome position: 53.45

GC content: 45.86

Gene sequence:

>1062_bases
GTGAAGGGATGCGTAAAGAATATCAGGCACAACGCCAAGTTCTGCATGTTGTTGGCTGTAATGGCCAGTGTCGTTGGTGT
AGGCCTTTATCCTTTTTCGCTAAAGGCATTAGAGAAACAAGACTCTGAAGCCATCTGTATTCTTATCCAAAGTGAGATGC
AAGATTGGCATCCAACCACGCCGCGTTATCAAGAGCTTAAGGCAAGATTCGATGCGCGTTGCCAGCAACCCGTCGCCAAC
GGTGTTAAATCCACGGTAAAGCAGCCTGCAATGCCAACTACGGCTCGCCAAGACAAGCCGCAGAACCCCAATCAGCTAAC
CGTGGTAACAGCTAAACCTACGCCCGCTCAAAGCACGATTTCGCCCATCTCTTCAGTACTCGAGTCGTTGTCGATTCTGA
TTTTTATACTTGTGTCTGCGATAGTCTCCTTGCTATTTCGTCCGACACTTAGGCAATACCGAGCAGAAAGGTTAGGTCAA
CAGGGTGAAAAGCGGGTCGCTAAGTTACTGAAACAGGGATTCAAAGATGAGGACTTCCGACTTTATCGCAATTTAATTTT
ACCTATGGATGAGATAACTGAAGGTACGTCTGCTTTGACAGAGGTGGATTTAGTTTTATTGACCCATTTTGGCGTGTTCG
TTATTGAAGTTAAAAATTACTCCGGCTGGATATTTGGGGGAGAGAAGCAGGCCCTGTGGACGCAAAAAATTTTTACTAAA
CAAACCCGCTTTAAAAATCCTCTCCATCAAAACTATAAACATTGCTTAGCCGTTGCCCACTGCTTAGGGTTAGTGGAGGG
ACTCCATTCGGTTGTTGTTTTTAGCGATGAGGCGAGCTTTAAAACGCCGTTGCCTAAAAATGTGGTGAATGAGTCAGGAC
TTTTGAGCTTAATCGCTCAATATAAAGGGCAAATCAGTCAAACCACGCATAACACAAATCTGGCATTTACTCGCGCCGCA
GAACGGCTGGATATTGCCCAGCAGCAATCAGACTCTGATGCTAAATCATTGCACTTAATGCAGTTTAAGCATCGCCGCGT
CGAGCCAACCATCTCAAGCTGA

Upstream 100 bases:

>100_bases
AGTTCGTTATAGCAATTTATGGCGGTTGAAAATAATAAATCAGATCAAGTAACGTATAACCGTTGCAATGATAGCAAACA
ATAACAGGAGTTATTTCAAG

Downstream 100 bases:

>100_bases
GGGGATACTTAATATTCTCGCGCAGGTGATAACGAATGGGATTCTTGCGCTATCTTTAAGAACATCATTGGCCCATAAGC
AATTGGAAGGATAAGGATAT

Product: NERD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MKGCVKNIRHNAKFCMLLAVMASVVGVGLYPFSLKALEKQDSEAICILIQSEMQDWHPTTPRYQELKARFDARCQQPVAN
GVKSTVKQPAMPTTARQDKPQNPNQLTVVTAKPTPAQSTISPISSVLESLSILIFILVSAIVSLLFRPTLRQYRAERLGQ
QGEKRVAKLLKQGFKDEDFRLYRNLILPMDEITEGTSALTEVDLVLLTHFGVFVIEVKNYSGWIFGGEKQALWTQKIFTK
QTRFKNPLHQNYKHCLAVAHCLGLVEGLHSVVVFSDEASFKTPLPKNVVNESGLLSLIAQYKGQISQTTHNTNLAFTRAA
ERLDIAQQQSDSDAKSLHLMQFKHRRVEPTISS

Sequences:

>Translated_353_residues
MKGCVKNIRHNAKFCMLLAVMASVVGVGLYPFSLKALEKQDSEAICILIQSEMQDWHPTTPRYQELKARFDARCQQPVAN
GVKSTVKQPAMPTTARQDKPQNPNQLTVVTAKPTPAQSTISPISSVLESLSILIFILVSAIVSLLFRPTLRQYRAERLGQ
QGEKRVAKLLKQGFKDEDFRLYRNLILPMDEITEGTSALTEVDLVLLTHFGVFVIEVKNYSGWIFGGEKQALWTQKIFTK
QTRFKNPLHQNYKHCLAVAHCLGLVEGLHSVVVFSDEASFKTPLPKNVVNESGLLSLIAQYKGQISQTTHNTNLAFTRAA
ERLDIAQQQSDSDAKSLHLMQFKHRRVEPTISS
>Mature_353_residues
MKGCVKNIRHNAKFCMLLAVMASVVGVGLYPFSLKALEKQDSEAICILIQSEMQDWHPTTPRYQELKARFDARCQQPVAN
GVKSTVKQPAMPTTARQDKPQNPNQLTVVTAKPTPAQSTISPISSVLESLSILIFILVSAIVSLLFRPTLRQYRAERLGQ
QGEKRVAKLLKQGFKDEDFRLYRNLILPMDEITEGTSALTEVDLVLLTHFGVFVIEVKNYSGWIFGGEKQALWTQKIFTK
QTRFKNPLHQNYKHCLAVAHCLGLVEGLHSVVVFSDEASFKTPLPKNVVNESGLLSLIAQYKGQISQTTHNTNLAFTRAA
ERLDIAQQQSDSDAKSLHLMQFKHRRVEPTISS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 NERD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011528 [H]

Pfam domain/function: PF08378 NERD [H]

EC number: NA

Molecular weight: Translated: 39603; Mature: 39603

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50965 NERD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGCVKNIRHNAKFCMLLAVMASVVGVGLYPFSLKALEKQDSEAICILIQSEMQDWHPTT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEEHHHHCCCCCC
PRYQELKARFDARCQQPVANGVKSTVKQPAMPTTARQDKPQNPNQLTVVTAKPTPAQSTI
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHH
SPISSVLESLSILIFILVSAIVSLLFRPTLRQYRAERLGQQGEKRVAKLLKQGFKDEDFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHH
LYRNLILPMDEITEGTSALTEVDLVLLTHFGVFVIEVKNYSGWIFGGEKQALWTQKIFTK
HHHHHHCCHHHHHCHHHHHHHHHHHHHHHCCEEEEEEECCCCEEECCCCHHHHHHHHHHH
QTRFKNPLHQNYKHCLAVAHCLGLVEGLHSVVVFSDEASFKTPLPKNVVNESGLLSLIAQ
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHCCHHHHHHHHH
YKGQISQTTHNTNLAFTRAAERLDIAQQQSDSDAKSLHLMQFKHRRVEPTISS
HHCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKGCVKNIRHNAKFCMLLAVMASVVGVGLYPFSLKALEKQDSEAICILIQSEMQDWHPTT
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEEEEHHHHCCCCCC
PRYQELKARFDARCQQPVANGVKSTVKQPAMPTTARQDKPQNPNQLTVVTAKPTPAQSTI
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHH
SPISSVLESLSILIFILVSAIVSLLFRPTLRQYRAERLGQQGEKRVAKLLKQGFKDEDFR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHH
LYRNLILPMDEITEGTSALTEVDLVLLTHFGVFVIEVKNYSGWIFGGEKQALWTQKIFTK
HHHHHHCCHHHHHCHHHHHHHHHHHHHHHCCEEEEEEECCCCEEECCCCHHHHHHHHHHH
QTRFKNPLHQNYKHCLAVAHCLGLVEGLHSVVVFSDEASFKTPLPKNVVNESGLLSLIAQ
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHCCHHHHHHHHH
YKGQISQTTHNTNLAFTRAAERLDIAQQQSDSDAKSLHLMQFKHRRVEPTISS
HHCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10515943; 12004073 [H]