| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is 117920650
Identifier: 117920650
GI number: 117920650
Start: 2649216
End: 2652050
Strand: Direct
Name: 117920650
Synonym: Shewana3_2207
Alternate gene names: NA
Gene position: 2649216-2652050 (Clockwise)
Preceding gene: 117920641
Following gene: 117920651
Centisome position: 53.28
GC content: 51.89
Gene sequence:
>2835_bases ATGCAATCTCGTACCCCACCATTACGACAAGAGTTACAACAAGGCTCCCAAGCGCCGCAAAAGCAGCACGCCATTCCTAA AACCCGATTGGCTGCACGTCTGTCGGCAATAAGCTTAGCCATGATGGTCGCAGGCTTTAGCACTAGCGCCCTTGCCGTTG GTAAGCTTGAAGGGCAAATTCGCGATAATGTCAGTCAACAACCCCTTGCTGGCGCGACCGTCACCTTAAAAGAGCTCAAC CTGAGTCAACAGGCAGGCCGCGATGGCCGCTTCTTCTTTGTCGGCGTGCAAGATGGCGATTACACCTTAGTAGTCAACTA CCTCGGTGCTATGCCGCTGGAACATAGCGTTAGCATTCGCGATAAACAAACCACGCTGCAAGATATCAACTTAAGCAGCC AAGATGTCGAGCATATTCGTGTCGTCGGCCAACAAGGCGCATTAAGTAAATCCATGAACCGCCAACGCGGCGCCGACAAT GTACTGAGTGTGGTCAGCGCCGATGTGCTGGGGAATTTCCCCGACAGCAATATCAGTGAGTCGCTGCAGCGGGTGCCAGG GCTATCTATCGAGCGAGATCAGGGCGAAGGTCGTTTTGTGCGTGTACGCGGTATGGCGCCGGACTATAACTCAGTGTCGA TGAACGGCACGCGCTTGCCGTCACCCGAGAGCGATCGCCGTGCGGTTGCCCTCGATGTAGTGCCATCGGATCTCTTGCAG TCGGTAGAAGTGAGTAAAACTCTAACGCCGGATATGGATGCCGATGCACTGGGTGGCGCCATTGAGGTTAAAAGTCTGTC GGCCTTCGATCGCGATGATACTTATCTCAACCTCAACGCCGAGGCGAGCCAAGATACCTTAACCGACAATACCAATCCCA AACTCGCCGCCAGCTACAGCGATATCTTTGCCGACAAGCTAGGGGTAGCCATAGGTGCCAGTTGGTATAACCGCGACTTT GGCTCAGATAACGTCGAAACCGGCGGTAAATGGGAATTTGCCGGGGATAACGGCTTGGAAGATGCGGCGCTTGAATCCAT CGACGCGCGGGATTATGAAATCAATCGGGAACGTTTAGGCATAGGCGTGAACTTCGATTATCGCCCAAGTGATGATACCG ATCTGTATCTGCGCACCCTTTACAGTGAGTTTGATGATACCGAAACCCGTAACAGCGCCAAAACTAAGTGGAAATCGCCG CAGCAAGCCAATGCCCTCAGCCAAGGCAAAACCACTCGCTCGCTAAAATCACGCACCGAGAACCAGAACATCACCTCCTT TGTACTGGGCGGTCAAACCCGCTTCGAACGCTGGACCTTCGACTATCAAGCGAGCCACAGCACCGCCAGCGCCGAAAAAC CGCGGGATATCGCTGGCGCCGACTTTGTCGCCAAGATTGATAACACGGGCTTTAGCAATACCAAACAGCCACAGATTATC GCCCCCGAAGACTACTTTCAAAACGCTAACTTTGAGCTAGATGAGATTGAAATTGCCGCCTCCAAGGCCGAAGACACCAT CAACAGTGGCCAACTGGATCTCACCCGCCAGTTAACCCTCGCGGATTACAGTGTCGAGCTAAAAACCGGGGTCAAGCTGA GTCGCCGCGATAAATCCAATCGCGAAGATATCTGGATCTACAGCGACTTAGGCGATCAAGGCGTGAGCGATGACGATTTG CTATTGAGTCAGTATGCGGGCAATGAGCTTGACTATGACCTCGGTCGCTTTGGCAGCGGGATCAATGCTGCGCCGTTATG GCAGCTTATCGATAGCCTCGATGCCGACAGCAATCGCGATGATATCGAGTCCACCATTAACGATTTTGATATCAGCGAAG ATATCAACGCCGCCTACCTGATGGGCCACATCGATATCGATAAACTGCGTATCTTAACTGGGCTGCGTTTCGAGCAAAAT CAATGGGATTCCAGTGGCTATGGTTATGATGGTGCCAAGGGCGAATTTATCGACATCAAGCACTCCCGCGATGAGGATCA TTGGCTGCCCGCACTGCACCTCACTTACCGCTATAGCGACAATACCGTGCTGCGCGCTGCCTGGACCAACACCTTAGTCC GCCCGACGTTCGGCCAATTAGCGCCGGGATATTTGCTCGAAGAGGATGATGGCGATATCGATTTAACCTTTGGCAATCCA CAGCTGAAGTCGCTCGAATCGATGAATTTTGACTTAAGCCTAGAGCACTACTTCGGCAATATCGGCTTAATTTCGGCGGG GTTGTTTTACAAAGATATCGACAACTTTATTTATCAGGCGGATTTAGCTGGCCGTGGCGATTATGTGGATGCCCATAGCG CCGTGACCTTCGTCAATGGCGACAGCGCCGACATCTACGGCGTGGAACTCAGCTATGTGCAAGAGTTTAACTTTTTGCCC GAGCCCTTTAATGCACTGGTGCTCAACTCTAACCTTACCTACACGGATTCCAGCGCCAAGATCAGTTGGCTGGAGGATGG CCAGTTACTGAGCCGCGATATTCCGATGCCAAGTCAATCGGATCTCACCGCTAACCTATCACTTGGCTATGAAAACAGTT ACGCCAGTGTCTGGTTATCGGCGGCCTATAAATCCGAATATTTACAGGAAGTCACTGAGCTCAGTGATGAGCGCTACGAT CTCTATCAAGACAATCACTTGCAGTGGGATTTTGTCGCCAAGGCCCATTTAACCAGCAATTTAACCTTGTATTTCAAAGG GGTGAATCTGACCGACGAGCCCTACTACAGCTACACGGGTGACAGTGCTTACAACGCCCAATACGAAGCCTATGGCCGCA CTTTCCAGTTAGGCGTGCAGTACACCAACTATTAA
Upstream 100 bases:
>100_bases ATCTGACATTTTGCTCCCCTAACTTGGCCGCCATCACAAATAGGCCTTCACCCAAGGCTTGCAATAACACTCAACAGAAA CAACTTAAACGGAACTCAAG
Downstream 100 bases:
>100_bases TCACCTATTGAATAAGAACAAAGATATGACAACAGCATTTACTAAAATTAGTGCCATAGCCGTTAGCTTAGCAGGCCTTA TCAGTGCGCCCTTGAGCGCA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NB-Dependent Receptor Subfamily; NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; Nb-Dependent Receptor; Nb-Dependent Outer Membrane Receptor Protein; NB-Dependent Outer Membrane Receptor Protein; NB-Dependent Receptor Subfamily Protein; Outer Membrane Protein; NB Dependent Receptor; Outer Membrane Insertion C-Terminal Signal; NB-Dependent Receptor Protein; Nucleoside Diphosphate Kinase; NB-Dependent Outer Membrane Fe Receptor Protein; NB Dependent Receptor For Iron Chelates; Outer Membrane Receptor Protein; 50S Ribosomal Protein L; NB-Dependent Outer Membrane Ferripyoverdine Receptor; NB Dependent Receptor-Related Protein; 3-Dehydroquinate Synthase; Ferrienterochelin/Colicin Outer Membrane Receptor; NB Dependent Receptor Protein; Outer Membrane Receptor Family Protein; NB-Dependent Receptor Plug Domain Protein; Argininosuccinate Synthase; NB-Dependent Receptor Domain Protein
Number of amino acids: Translated: 944; Mature: 944
Protein sequence:
>944_residues MQSRTPPLRQELQQGSQAPQKQHAIPKTRLAARLSAISLAMMVAGFSTSALAVGKLEGQIRDNVSQQPLAGATVTLKELN LSQQAGRDGRFFFVGVQDGDYTLVVNYLGAMPLEHSVSIRDKQTTLQDINLSSQDVEHIRVVGQQGALSKSMNRQRGADN VLSVVSADVLGNFPDSNISESLQRVPGLSIERDQGEGRFVRVRGMAPDYNSVSMNGTRLPSPESDRRAVALDVVPSDLLQ SVEVSKTLTPDMDADALGGAIEVKSLSAFDRDDTYLNLNAEASQDTLTDNTNPKLAASYSDIFADKLGVAIGASWYNRDF GSDNVETGGKWEFAGDNGLEDAALESIDARDYEINRERLGIGVNFDYRPSDDTDLYLRTLYSEFDDTETRNSAKTKWKSP QQANALSQGKTTRSLKSRTENQNITSFVLGGQTRFERWTFDYQASHSTASAEKPRDIAGADFVAKIDNTGFSNTKQPQII APEDYFQNANFELDEIEIAASKAEDTINSGQLDLTRQLTLADYSVELKTGVKLSRRDKSNREDIWIYSDLGDQGVSDDDL LLSQYAGNELDYDLGRFGSGINAAPLWQLIDSLDADSNRDDIESTINDFDISEDINAAYLMGHIDIDKLRILTGLRFEQN QWDSSGYGYDGAKGEFIDIKHSRDEDHWLPALHLTYRYSDNTVLRAAWTNTLVRPTFGQLAPGYLLEEDDGDIDLTFGNP QLKSLESMNFDLSLEHYFGNIGLISAGLFYKDIDNFIYQADLAGRGDYVDAHSAVTFVNGDSADIYGVELSYVQEFNFLP EPFNALVLNSNLTYTDSSAKISWLEDGQLLSRDIPMPSQSDLTANLSLGYENSYASVWLSAAYKSEYLQEVTELSDERYD LYQDNHLQWDFVAKAHLTSNLTLYFKGVNLTDEPYYSYTGDSAYNAQYEAYGRTFQLGVQYTNY
Sequences:
>Translated_944_residues MQSRTPPLRQELQQGSQAPQKQHAIPKTRLAARLSAISLAMMVAGFSTSALAVGKLEGQIRDNVSQQPLAGATVTLKELN LSQQAGRDGRFFFVGVQDGDYTLVVNYLGAMPLEHSVSIRDKQTTLQDINLSSQDVEHIRVVGQQGALSKSMNRQRGADN VLSVVSADVLGNFPDSNISESLQRVPGLSIERDQGEGRFVRVRGMAPDYNSVSMNGTRLPSPESDRRAVALDVVPSDLLQ SVEVSKTLTPDMDADALGGAIEVKSLSAFDRDDTYLNLNAEASQDTLTDNTNPKLAASYSDIFADKLGVAIGASWYNRDF GSDNVETGGKWEFAGDNGLEDAALESIDARDYEINRERLGIGVNFDYRPSDDTDLYLRTLYSEFDDTETRNSAKTKWKSP QQANALSQGKTTRSLKSRTENQNITSFVLGGQTRFERWTFDYQASHSTASAEKPRDIAGADFVAKIDNTGFSNTKQPQII APEDYFQNANFELDEIEIAASKAEDTINSGQLDLTRQLTLADYSVELKTGVKLSRRDKSNREDIWIYSDLGDQGVSDDDL LLSQYAGNELDYDLGRFGSGINAAPLWQLIDSLDADSNRDDIESTINDFDISEDINAAYLMGHIDIDKLRILTGLRFEQN QWDSSGYGYDGAKGEFIDIKHSRDEDHWLPALHLTYRYSDNTVLRAAWTNTLVRPTFGQLAPGYLLEEDDGDIDLTFGNP QLKSLESMNFDLSLEHYFGNIGLISAGLFYKDIDNFIYQADLAGRGDYVDAHSAVTFVNGDSADIYGVELSYVQEFNFLP EPFNALVLNSNLTYTDSSAKISWLEDGQLLSRDIPMPSQSDLTANLSLGYENSYASVWLSAAYKSEYLQEVTELSDERYD LYQDNHLQWDFVAKAHLTSNLTLYFKGVNLTDEPYYSYTGDSAYNAQYEAYGRTFQLGVQYTNY >Mature_944_residues MQSRTPPLRQELQQGSQAPQKQHAIPKTRLAARLSAISLAMMVAGFSTSALAVGKLEGQIRDNVSQQPLAGATVTLKELN LSQQAGRDGRFFFVGVQDGDYTLVVNYLGAMPLEHSVSIRDKQTTLQDINLSSQDVEHIRVVGQQGALSKSMNRQRGADN VLSVVSADVLGNFPDSNISESLQRVPGLSIERDQGEGRFVRVRGMAPDYNSVSMNGTRLPSPESDRRAVALDVVPSDLLQ SVEVSKTLTPDMDADALGGAIEVKSLSAFDRDDTYLNLNAEASQDTLTDNTNPKLAASYSDIFADKLGVAIGASWYNRDF GSDNVETGGKWEFAGDNGLEDAALESIDARDYEINRERLGIGVNFDYRPSDDTDLYLRTLYSEFDDTETRNSAKTKWKSP QQANALSQGKTTRSLKSRTENQNITSFVLGGQTRFERWTFDYQASHSTASAEKPRDIAGADFVAKIDNTGFSNTKQPQII APEDYFQNANFELDEIEIAASKAEDTINSGQLDLTRQLTLADYSVELKTGVKLSRRDKSNREDIWIYSDLGDQGVSDDDL LLSQYAGNELDYDLGRFGSGINAAPLWQLIDSLDADSNRDDIESTINDFDISEDINAAYLMGHIDIDKLRILTGLRFEQN QWDSSGYGYDGAKGEFIDIKHSRDEDHWLPALHLTYRYSDNTVLRAAWTNTLVRPTFGQLAPGYLLEEDDGDIDLTFGNP QLKSLESMNFDLSLEHYFGNIGLISAGLFYKDIDNFIYQADLAGRGDYVDAHSAVTFVNGDSADIYGVELSYVQEFNFLP EPFNALVLNSNLTYTDSSAKISWLEDGQLLSRDIPMPSQSDLTANLSLGYENSYASVWLSAAYKSEYLQEVTELSDERYD LYQDNHLQWDFVAKAHLTSNLTLYFKGVNLTDEPYYSYTGDSAYNAQYEAYGRTFQLGVQYTNY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 105006; Mature: 105006
Theoretical pI: Translated: 4.22; Mature: 4.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSRTPPLRQELQQGSQAPQKQHAIPKTRLAARLSAISLAMMVAGFSTSALAVGKLEGQI CCCCCCHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH RDNVSQQPLAGATVTLKELNLSQQAGRDGRFFFVGVQDGDYTLVVNYLGAMPLEHSVSIR HCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEC DKQTTLQDINLSSQDVEHIRVVGQQGALSKSMNRQRGADNVLSVVSADVLGNFPDSNISE CCHHHHHHCCCCHHCCHHHHEECCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHH SLQRVPGLSIERDQGEGRFVRVRGMAPDYNSVSMNGTRLPSPESDRRAVALDVVPSDLLQ HHHHCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHH SVEVSKTLTPDMDADALGGAIEVKSLSAFDRDDTYLNLNAEASQDTLTDNTNPKLAASYS HHHHHHCCCCCCCHHHCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECHH DIFADKLGVAIGASWYNRDFGSDNVETGGKWEFAGDNGLEDAALESIDARDYEINRERLG HHHHHHHHHEEECHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCEEECHHHEE IGVNFDYRPSDDTDLYLRTLYSEFDDTETRNSAKTKWKSPQQANALSQGKTTRSLKSRTE EEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHCCCHHHHHHHHCC NQNITSFVLGGQTRFERWTFDYQASHSTASAEKPRDIAGADFVAKIDNTGFSNTKQPQII CCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEE APEDYFQNANFELDEIEIAASKAEDTINSGQLDLTRQLTLADYSVELKTGVKLSRRDKSN CCHHHHCCCCCEEEHEEEEHHHHHCCCCCCCEEEEEEEEEEEEEEEEECCCEEECCCCCC REDIWIYSDLGDQGVSDDDLLLSQYAGNELDYDLGRFGSGINAAPLWQLIDSLDADSNRD CCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCCCHH DIESTINDFDISEDINAAYLMGHIDIDKLRILTGLRFEQNQWDSSGYGYDGAKGEFIDIK HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE HSRDEDHWLPALHLTYRYSDNTVLRAAWTNTLVRPTFGQLAPGYLLEEDDGDIDLTFGNP CCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCEEEECCCCCEEEEECCC QLKSLESMNFDLSLEHYFGNIGLISAGLFYKDIDNFIYQADLAGRGDYVDAHSAVTFVNG HHHHHHHCCCCEEEHHHCCCEEEEEHHHHHHHHHHHHEEECCCCCCCEEECCCEEEEEEC DSADIYGVELSYVQEFNFLPEPFNALVLNSNLTYTDSSAKISWLEDGQLLSRDIPMPSQS CCCEEEEEEEHHHHHCCCCCCCCCEEEECCCCEEECCCCEEEEECCCCHHHCCCCCCCCC DLTANLSLGYENSYASVWLSAAYKSEYLQEVTELSDERYDLYQDNHLQWDFVAKAHLTSN CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCC LTLYFKGVNLTDEPYYSYTGDSAYNAQYEAYGRTFQLGVQYTNY EEEEEEECCCCCCCCEEECCCCCCCCCHHHCCCEEEEEEEECCC >Mature Secondary Structure MQSRTPPLRQELQQGSQAPQKQHAIPKTRLAARLSAISLAMMVAGFSTSALAVGKLEGQI CCCCCCHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH RDNVSQQPLAGATVTLKELNLSQQAGRDGRFFFVGVQDGDYTLVVNYLGAMPLEHSVSIR HCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEC DKQTTLQDINLSSQDVEHIRVVGQQGALSKSMNRQRGADNVLSVVSADVLGNFPDSNISE CCHHHHHHCCCCHHCCHHHHEECCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHH SLQRVPGLSIERDQGEGRFVRVRGMAPDYNSVSMNGTRLPSPESDRRAVALDVVPSDLLQ HHHHCCCCEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHH SVEVSKTLTPDMDADALGGAIEVKSLSAFDRDDTYLNLNAEASQDTLTDNTNPKLAASYS HHHHHHCCCCCCCHHHCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECHH DIFADKLGVAIGASWYNRDFGSDNVETGGKWEFAGDNGLEDAALESIDARDYEINRERLG HHHHHHHHHEEECHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHCCCCCEEECHHHEE IGVNFDYRPSDDTDLYLRTLYSEFDDTETRNSAKTKWKSPQQANALSQGKTTRSLKSRTE EEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHCCCHHHHHHHHCC NQNITSFVLGGQTRFERWTFDYQASHSTASAEKPRDIAGADFVAKIDNTGFSNTKQPQII CCCCEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEE APEDYFQNANFELDEIEIAASKAEDTINSGQLDLTRQLTLADYSVELKTGVKLSRRDKSN CCHHHHCCCCCEEEHEEEEHHHHHCCCCCCCEEEEEEEEEEEEEEEEECCCEEECCCCCC REDIWIYSDLGDQGVSDDDLLLSQYAGNELDYDLGRFGSGINAAPLWQLIDSLDADSNRD CCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCCCHH DIESTINDFDISEDINAAYLMGHIDIDKLRILTGLRFEQNQWDSSGYGYDGAKGEFIDIK HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE HSRDEDHWLPALHLTYRYSDNTVLRAAWTNTLVRPTFGQLAPGYLLEEDDGDIDLTFGNP CCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCHHCCCCCEEEECCCCCEEEEECCC QLKSLESMNFDLSLEHYFGNIGLISAGLFYKDIDNFIYQADLAGRGDYVDAHSAVTFVNG HHHHHHHCCCCEEEHHHCCCEEEEEHHHHHHHHHHHHEEECCCCCCCEEECCCEEEEEEC DSADIYGVELSYVQEFNFLPEPFNALVLNSNLTYTDSSAKISWLEDGQLLSRDIPMPSQS CCCEEEEEEEHHHHHCCCCCCCCCEEEECCCCEEECCCCEEEEECCCCHHHCCCCCCCCC DLTANLSLGYENSYASVWLSAAYKSEYLQEVTELSDERYDLYQDNHLQWDFVAKAHLTSN CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCC LTLYFKGVNLTDEPYYSYTGDSAYNAQYEAYGRTFQLGVQYTNY EEEEEEECCCCCCCCEEECCCCCCCCCHHHCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA