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The map label for this gene is yddU [C]

Identifier: 117920644

GI number: 117920644

Start: 2642294

End: 2643496

Strand: Reverse

Name: yddU [C]

Synonym: Shewana3_2201

Alternate gene names: 117920644

Gene position: 2643496-2642294 (Counterclockwise)

Preceding gene: 117920645

Following gene: 117920643

Centisome position: 53.17

GC content: 42.64

Gene sequence:

>1203_bases
ATGAATATACTTATCATCGATGATCAAAAATTTATCCGTGAGACGCTCAAAGCAGATATTCATCGGTATTTAGCTGAGGA
CGATATCCATATTTATGAGGCGAGTAATGGCAACCAAGGGATAGAGTTGCTGATGGCGCTGGATGTATCACTCGACTTAG
TGATTATCGATTTAAAAATGGAGCAGGGGGATGGTATCGCTGTCATTAATATGCTGGCGACAACGCCTCGTTGGCTGACT
GTGCCTATTGCGGTGATCAGTTCCTCCGATAAACGCACACTGGAATTGGTTGATTGCATTATTCATACCTTGAGACTCAA
CTTGGTTGGCGTGTTTGCCAAACCTGTTAATGCGAGCGATATCTTAACCCCATTACTGGCAACAGAAGCCGAAGATATTG
AGCCAGACAATCAGGCTAATCGACGTCAGCGGCATGCAAATATCAATGTGCAGCAACTACTTAAAGATGAGCAGTTGATC
CTCTGTTATCAGCCTAAGATTAACTTAATCACTCAGGAAATCGTGGGGTTTGAGGTGTTATCGCGACTGTGCGATCGTCA
TCATGGGTATATTTACCCCGATGCGTTTTTACCCTTAATCAATCAGCAGGGCCTAAATAGCGTTTTCACTCGTATGGTGA
TTTCTCAAGCGTTGCAATGTTGGTTACGTCAGCCTCTCTTAGCCAAGTATTCACTATCGATTAATATTACTGCCGACGAT
CTTACCTGCGATGAGTTGATTGAATACATTATTGAATCAAGCCGGAATCATGATGGTATTCGGTTGATGTTAGAGTTGAC
CGAATCCCAAGAGATCATCAATCAGGATAGAGTGCTCAATTCAATTGCACGGCTGATTATTAACAATATTGATATTTCCC
TCGATGATTTTGGCAAAAGCTATTCCACCTACGATCGCCTCGATGCTATTCCGTTTAAAGAAATCAAAATCGATAAAAGT
TTTGTCTCTGATATGGATATCAATCATCAACATTATCTGATTGTTGAGTCAACCATTGCCCTTGCGCAGAAGATGCATGT
CAAAGTGGTCGCAGAGGGGGTAGAAACAGCGGCCATTGAGGCTATTTTGACTGCCCTAGGATGTGATGTGGCACAAGGCT
ATTTGTATAGCCCTCCCATTGAAGGTCGATATCTTATTGACTGGATAGGCCAATATCAGGGCGAATTAATGCATGCACAG
TGA

Upstream 100 bases:

>100_bases
AAGTGATGGCGAATCGAAATTTGCTGAAATTGTCTGTCATTCCTTCGGCTAAGTCACAGACAATCGATCCCATTTTCTTT
ATGCAGTTAGGGACCAGCAT

Downstream 100 bases:

>100_bases
TGTATTGGAGCCTCAAGTACGGCGGGCAGTATGGTTTTTTATGAGCCAATACTCCCCCGTTCAACAGCAAGTGCTTAGGC
GAGCCTTACTCACTGAACTT

Product: response regulator receiver modulated diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MNILIIDDQKFIRETLKADIHRYLAEDDIHIYEASNGNQGIELLMALDVSLDLVIIDLKMEQGDGIAVINMLATTPRWLT
VPIAVISSSDKRTLELVDCIIHTLRLNLVGVFAKPVNASDILTPLLATEAEDIEPDNQANRRQRHANINVQQLLKDEQLI
LCYQPKINLITQEIVGFEVLSRLCDRHHGYIYPDAFLPLINQQGLNSVFTRMVISQALQCWLRQPLLAKYSLSINITADD
LTCDELIEYIIESSRNHDGIRLMLELTESQEIINQDRVLNSIARLIINNIDISLDDFGKSYSTYDRLDAIPFKEIKIDKS
FVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETAAIEAILTALGCDVAQGYLYSPPIEGRYLIDWIGQYQGELMHAQ

Sequences:

>Translated_400_residues
MNILIIDDQKFIRETLKADIHRYLAEDDIHIYEASNGNQGIELLMALDVSLDLVIIDLKMEQGDGIAVINMLATTPRWLT
VPIAVISSSDKRTLELVDCIIHTLRLNLVGVFAKPVNASDILTPLLATEAEDIEPDNQANRRQRHANINVQQLLKDEQLI
LCYQPKINLITQEIVGFEVLSRLCDRHHGYIYPDAFLPLINQQGLNSVFTRMVISQALQCWLRQPLLAKYSLSINITADD
LTCDELIEYIIESSRNHDGIRLMLELTESQEIINQDRVLNSIARLIINNIDISLDDFGKSYSTYDRLDAIPFKEIKIDKS
FVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETAAIEAILTALGCDVAQGYLYSPPIEGRYLIDWIGQYQGELMHAQ
>Mature_400_residues
MNILIIDDQKFIRETLKADIHRYLAEDDIHIYEASNGNQGIELLMALDVSLDLVIIDLKMEQGDGIAVINMLATTPRWLT
VPIAVISSSDKRTLELVDCIIHTLRLNLVGVFAKPVNASDILTPLLATEAEDIEPDNQANRRQRHANINVQQLLKDEQLI
LCYQPKINLITQEIVGFEVLSRLCDRHHGYIYPDAFLPLINQQGLNSVFTRMVISQALQCWLRQPLLAKYSLSINITADD
LTCDELIEYIIESSRNHDGIRLMLELTESQEIINQDRVLNSIARLIINNIDISLDDFGKSYSTYDRLDAIPFKEIKIDKS
FVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETAAIEAILTALGCDVAQGYLYSPPIEGRYLIDWIGQYQGELMHAQ

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=245, Percent_Identity=32.2448979591837, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI1786507, Length=251, Percent_Identity=32.6693227091633, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI87081980, Length=245, Percent_Identity=28.5714285714286, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87081743, Length=258, Percent_Identity=30.6201550387597, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787541, Length=251, Percent_Identity=29.0836653386454, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=28.5140562248996, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=30.2521008403361, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082096, Length=235, Percent_Identity=34.0425531914894, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1788849, Length=284, Percent_Identity=29.2253521126761, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI226510982, Length=236, Percent_Identity=27.5423728813559, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=30.8333333333333, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1788502, Length=245, Percent_Identity=26.1224489795918, Blast_Score=85, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 45293; Mature: 45293

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILIIDDQKFIRETLKADIHRYLAEDDIHIYEASNGNQGIELLMALDVSLDLVIIDLKM
CEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEEEE
EQGDGIAVINMLATTPRWLTVPIAVISSSDKRTLELVDCIIHTLRLNLVGVFAKPVNASD
CCCCCEEEEEEHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHH
ILTPLLATEAEDIEPDNQANRRQRHANINVQQLLKDEQLILCYQPKINLITQEIVGFEVL
HHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHHHH
SRLCDRHHGYIYPDAFLPLINQQGLNSVFTRMVISQALQCWLRQPLLAKYSLSINITADD
HHHHHHCCCEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECC
LTCDELIEYIIESSRNHDGIRLMLELTESQEIINQDRVLNSIARLIINNIDISLDDFGKS
CCHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCC
YSTYDRLDAIPFKEIKIDKSFVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETAAIE
CCHHHHHCCCCCHHEEECHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
AILTALGCDVAQGYLYSPPIEGRYLIDWIGQYQGELMHAQ
HHHHHHCCHHHCCCEECCCCCCCHHHHHHHHHCCCEECCC
>Mature Secondary Structure
MNILIIDDQKFIRETLKADIHRYLAEDDIHIYEASNGNQGIELLMALDVSLDLVIIDLKM
CEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEEEEE
EQGDGIAVINMLATTPRWLTVPIAVISSSDKRTLELVDCIIHTLRLNLVGVFAKPVNASD
CCCCCEEEEEEHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHH
ILTPLLATEAEDIEPDNQANRRQRHANINVQQLLKDEQLILCYQPKINLITQEIVGFEVL
HHHHHHHCCCCCCCCCCHHHHHHHHCCCCHHHHCCCCCEEEEECCCCHHHHHHHHHHHHH
SRLCDRHHGYIYPDAFLPLINQQGLNSVFTRMVISQALQCWLRQPLLAKYSLSINITADD
HHHHHHCCCEECCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECC
LTCDELIEYIIESSRNHDGIRLMLELTESQEIINQDRVLNSIARLIINNIDISLDDFGKS
CCHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCC
YSTYDRLDAIPFKEIKIDKSFVSDMDINHQHYLIVESTIALAQKMHVKVVAEGVETAAIE
CCHHHHHCCCCCHHEEECHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
AILTALGCDVAQGYLYSPPIEGRYLIDWIGQYQGELMHAQ
HHHHHHCCHHHCCCEECCCCCCCHHHHHHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]